Lyun003162.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000480.1:227712-233537[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 53 0.7 9.9 7.0 1.0 1 23 142 164 142 164 0.97
2 53 0.0012 0.017 15.6 5.8 1 23 169 191 169 191 0.99
3 53 0.037 0.52 11.0 1.4 1 23 196 218 196 218 0.98
4 53 0.00062 0.0088 16.6 0.7 1 23 223 245 223 245 0.99
5 53 0.0083 0.12 13.0 1.7 1 23 250 272 250 272 0.99
6 53 0.0018 0.026 15.1 1.3 1 23 277 299 277 299 0.99
7 53 0.00095 0.013 16.0 3.8 1 23 304 326 304 326 0.99
8 53 0.036 0.5 11.0 0.4 1 23 331 353 331 353 0.98
9 53 0.028 0.4 11.4 2.6 1 23 358 380 358 380 0.98
10 53 0.17 2.4 8.9 4.5 1 23 385 407 385 407 0.98
11 53 0.056 0.79 10.4 0.6 1 23 412 434 412 434 0.98
12 53 0.16 2.3 9.0 3.6 1 23 439 461 439 461 0.98
13 53 0.00061 0.0086 16.6 0.7 1 23 466 488 466 488 0.99
14 53 0.0083 0.12 13.0 1.7 1 23 493 515 493 515 0.99
15 53 0.0029 0.041 14.5 1.4 1 23 520 542 520 542 0.99
16 53 0.00095 0.013 16.0 3.8 1 23 547 569 547 569 0.99
17 53 0.031 0.44 11.2 1.1 1 23 574 596 574 596 0.98
18 53 0.00062 0.0088 16.6 0.7 1 23 601 623 601 623 0.99
19 53 0.00095 0.013 16.0 3.8 1 23 628 650 628 650 0.99
20 53 0.036 0.5 11.0 0.4 1 23 655 677 655 677 0.98
21 53 0.028 0.4 11.4 2.6 1 23 682 704 682 704 0.98
22 53 0.17 2.4 8.9 4.5 1 23 709 731 709 731 0.98
23 53 0.056 0.79 10.4 0.6 1 23 736 758 736 758 0.98
24 53 0.16 2.3 9.0 3.6 1 23 763 785 763 785 0.98
25 53 0.00017 0.0023 18.4 0.7 1 23 790 812 790 812 0.99
26 53 3e-05 0.00043 20.7 1.4 1 23 817 839 817 839 0.99
27 53 0.06 0.85 10.3 1.7 1 23 844 866 844 866 0.98
28 53 0.0018 0.025 15.1 1.1 1 23 871 893 871 893 0.99
29 53 0.0005 0.0071 16.9 4.7 1 23 898 920 898 920 0.99
30 53 0.025 0.36 11.5 1.3 1 23 925 947 925 947 0.98
31 53 0.0018 0.025 15.1 1.1 1 23 952 974 952 974 0.99
32 53 2.3e-05 0.00033 21.1 1.7 1 23 979 1001 979 1001 0.99
33 53 0.12 1.8 9.3 2.6 1 23 1006 1028 1006 1028 0.98
34 53 0.00028 0.0039 17.7 0.7 1 23 1033 1055 1033 1055 0.98
35 53 0.025 0.36 11.5 1.3 1 23 1060 1082 1060 1082 0.98
36 53 0.00044 0.0062 17.0 0.8 1 23 1087 1109 1087 1109 0.99
37 53 0.0005 0.0071 16.9 4.7 1 23 1114 1136 1114 1136 0.99
38 53 0.12 1.8 9.3 2.6 1 23 1141 1163 1141 1163 0.98
39 53 0.0017 0.024 15.2 0.3 1 23 1168 1190 1168 1190 0.99
40 53 0.069 0.98 10.1 0.7 1 23 1195 1217 1195 1217 0.98
41 53 2.3e-05 0.00033 21.1 1.7 1 23 1222 1244 1222 1244 0.99
42 53 0.00062 0.0088 16.6 3.6 1 23 1249 1271 1249 1271 0.99
43 53 0.0034 0.048 14.3 4.4 1 23 1276 1298 1276 1298 0.99
44 53 0.0013 0.018 15.6 2.8 1 23 1303 1325 1303 1325 0.99
45 53 0.019 0.27 11.9 3.6 1 23 1330 1352 1330 1352 0.99
46 53 0.055 0.78 10.4 0.6 1 23 1357 1379 1357 1379 0.98
47 53 0.064 0.9 10.2 0.5 1 23 1384 1406 1384 1406 0.98
48 53 0.016 0.23 12.1 2.2 1 23 1411 1433 1411 1433 0.99
49 53 0.0034 0.048 14.3 4.4 1 23 1438 1460 1438 1460 0.99
50 53 0.0013 0.018 15.6 2.8 1 23 1465 1487 1465 1487 0.99
51 53 0.039 0.56 10.9 4.1 1 23 1492 1514 1492 1514 0.99
52 53 0.056 0.79 10.4 0.6 1 23 1519 1541 1519 1541 0.98
53 53 0.16 2.3 9.0 3.6 1 23 1546 1568 1546 1568 0.98

Sequence Information

Coding Sequence
ATGGATATTCATTCTACAGaaagttatataataaaatctgaaattattttaacagaaacgtttTGTGGAAATTATGAAGATTATTGTAATGAACAACTGAAAATGGAGCCAGTAGATTACAAAGAATTGTTTAAGTATAAGGAAGAAGATGATCCTGCAGAGCACATGGATACATCTGCTGCCCCAATACAAGAGTGTTCTGATAATGAGCATAACTTTGCAACAATGGAAGAAGATTCTCTGCTAGGACAtctaaaaagtacaaaaaatgttcaatatttttgtaagcaatGTAACTTTAGAACTCATTTGGAATGTTTCATAAAAAAGCATTTGGAAATTCACAAGGGAGTAGATGGTACTTATATTACtaaggaatgtaattttaagatgcCACATGTAAAACCGCCAAGAAGTGAtgaatacatttgtaatgaatgcAGTTTTACCACGTTAAAGAAAAATTCTCTAAGGATACATATGACAATTCATACAGGTAAagaatacaagtgtaaagattgtaattataaaacaatatctaaatttcatctaaagaaacatctcaaaattcatacaggtgaggactataggtgtaacgaatgtgattttaaaacagtgtggaaacaaaatctaaagaaacatgtcaaaattcatacacctgatgaatataaatgtgacgagtgtaattacaaaacagtgcAGAAAGGTAGTctgaaggaacatgtcaaaattcatacaggtgaggaatacaagtgtaaagattgtgattataaaacagtgtggaaacaaaatctaaagaaacatgtcaaaattcatacacttgataaatataagtgtgaagagtgtaattacaaaacagtgcggaaaggtAGTTtcaaggaacatgtcaaaatacacacaggtgaggaatataagtgtaaagattgtgattataaaacaatatctaaacattatctaaaaatacatctcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattacaaaacagtgtggaaagatagtctgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacagtgtggaaacataatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgactataaaacaatatCTAAACTTTGTCTAAaagaacatttcaaaattcatacaggtgatgaatataagtgtgaagagtgtgattataaatcagtaTGGAAAAggaatctaatgcaacatgtcaaaattcatacaggtgagaaatataagtgtaaagaatgtgattttaaaacagtgtggaaacatagtctaaagaaacatgtcaaaattcatacacttgatgaatataagtgtgaagagtgtaattacaaaacagtgcAGAAAGGTAGTctgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacagtgtggaaacaaaatctaaagaaacatgtcaaaattcatacacttgatgaatataagtgtgaagagtgtaattacaaaacagagCGGAAAGGTAGTTtcaaggaacatgtcaaaatacatacaggtgaggaatataagtgtaaagattgtgattataaaacaatatctaaacattatctaaaaatacatctcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattttaaaacagtgtggaaacaaaatctaaagaaacatgtcaaaattcatacacctgatgaatataaatgtgacgagtgtaattacaaaacagtgcAGAAAGGTAGTctgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacaatatctaaacattatctaaaaatacatctcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattacaaaacagtgtggaaagatagtttgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacagtgtggaaacataatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtaaagattgtgactataaaacaatatCTAAACTTTGTCTAAaagaacatttcaaaattcatacaggtgatgaatataagtgtgaagagtgtgattataaatcagtaTGGAAAAggaatctaatgcaacatgtcaaaattcatacaggtgagaaatataagtgtaaagaatgtgattttaaaacagtgtggaaacatagtctaaagaaacatgtcaaaattcatacaaaggatgaatataagtgtgaagagtgtgattacaaaacagtgcggaaagatAGTctgaaggaacatgtcaaaattcatacaggtgagaaatataagtgtaaagattgtgattataatacagtgaggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgagaaatataagtgtaaaaattgtgattataaaacagtgtggaaacaagatctaaagaaacatgtcaaaattcatacacgtgatgaatataagtgtgaagagtgtaattacaaaacaatgCGGAAAGGTAGTctgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacaacatctaaacattatctaaaaatacatctcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggaaacaagatctaaagaaacatgtcaaaattcatacaaaggatgaatataagtgtgaagagtgtaattacaaaacaatgCGGAAAGGTAGTctgaaggaacatgtcaaaattcatacaggtgagaaatataagtgtaaagattgtgattataaaacagtgaggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattttaaaacagtgtggaaacatagtctaaagaaacatgtcaaaattcatacaaaggatgaatataagtgtgaagagtGTGATTACAAATCAGTGCGGAAAGATAGTctgaaggaacatgtcaaaattcatacatgcGAGGactataaatgtaaagaatgtgattataaaacagtgtggaaacaagatctaaagaaacatgtcaaaattcatacaaaggatgaatataagtgtgaagagtgtaattacaaaacagtgcggaaaggtAGTctgaaggaacatgtcaaaattcatacaggtgaggaatataagtgtaaagattgtgattataaaacaacatctaaacattatctaaaaatacatctcaaaattcatacaggtgatgaatataagtgtgaagaatgtgattttaaaacagtgtggaaacatagtctaaagaaacatgtcaaaattcatacaaaggatgaatataagtgtgaagagtgtgattacaaaacagtgcggATAGATAGTctgaaggaacatgtcaaaattcatacatgcGAGGactataaatgtaaagaatgtgattataaaacagtgtggaaacaagatctaaaggaacatgtcaaaattcatacaggcgaggaatataagtgtaaagattgtgattataaaacagtgaggaaaagtaatctaaaggaacatgtcaaaattcatacaggtgagaaatataagtgtaaagattgtgattataaaacagtgaggaaatgTAATCTAAGggtacatgtcaaaattcatacaggcgaagaatataagtgtaaagattgtgattataaaacaatatataaacattatctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagattgtaattataaaacaatatctaAACGTTATCTAAaagaacatctcaaaattcatacaggtgatgaatataagtgtaaagattgtgactataaaacaatatCTAAACTTTGTCTAAaagaacatctcaaaattcatacaggtgatgaatataagtgtgaagagtgtgattataaatcaatatggaaaaaaaatttaatgcaacatgtcaaaattcatacaggggatgaatataagtgtgaagtgtgtgattataaatcagtaTGGAAAAagaatctaatgcaacatgtcaaaattcacacaggtgaggaatatacgtgtaaagaatgtgattataaaacagtgtggaaacacaatctaaaggaacatatcaaaattcatgtaggtgaagaatataagtgtaaagattgtgattataaaacaatatataaacattatctaaaggaacatctcaaaattcatacaggtgatgaatataagtgtaaagattgtaactataaaacaataTCTAAACGTTATCTAAaagaacatctcaaaattcatacaggtgatgaatataagtgtaaagattgtaactataaaacaataTCTAAACTTTGTCTAAaagaacatctcaaaattcatacaggtgatgaatataagtgtgaagagtgtgattataaatcagtaTGGAAAAggaatctaatgcaacatgtcaaaattcatactggtgaggaatataagtgtaaagaatgtgattttaaaacagtgtggaaacatagtctaaagaaacatgtcaaaattcatacaaaggattaa
Protein Sequence
MDIHSTESYIIKSEIILTETFCGNYEDYCNEQLKMEPVDYKELFKYKEEDDPAEHMDTSAAPIQECSDNEHNFATMEEDSLLGHLKSTKNVQYFCKQCNFRTHLECFIKKHLEIHKGVDGTYITKECNFKMPHVKPPRSDEYICNECSFTTLKKNSLRIHMTIHTGKEYKCKDCNYKTISKFHLKKHLKIHTGEDYRCNECDFKTVWKQNLKKHVKIHTPDEYKCDECNYKTVQKGSLKEHVKIHTGEEYKCKDCDYKTVWKQNLKKHVKIHTLDKYKCEECNYKTVRKGSFKEHVKIHTGEEYKCKDCDYKTISKHYLKIHLKIHTGDEYKCEECDYKTVWKDSLKEHVKIHTGEEYKCKDCDYKTVWKHNLKEHVKIHTGDEYKCKDCDYKTISKLCLKEHFKIHTGDEYKCEECDYKSVWKRNLMQHVKIHTGEKYKCKECDFKTVWKHSLKKHVKIHTLDEYKCEECNYKTVQKGSLKEHVKIHTGEEYKCKDCDYKTVWKQNLKKHVKIHTLDEYKCEECNYKTERKGSFKEHVKIHTGEEYKCKDCDYKTISKHYLKIHLKIHTGDEYKCEECDFKTVWKQNLKKHVKIHTPDEYKCDECNYKTVQKGSLKEHVKIHTGEEYKCKDCDYKTISKHYLKIHLKIHTGDEYKCEECDYKTVWKDSLKEHVKIHTGEEYKCKDCDYKTVWKHNLKEHVKIHTGDEYKCKDCDYKTISKLCLKEHFKIHTGDEYKCEECDYKSVWKRNLMQHVKIHTGEKYKCKECDFKTVWKHSLKKHVKIHTKDEYKCEECDYKTVRKDSLKEHVKIHTGEKYKCKDCDYNTVRKSNLKEHVKIHTGEKYKCKNCDYKTVWKQDLKKHVKIHTRDEYKCEECNYKTMRKGSLKEHVKIHTGEEYKCKDCDYKTTSKHYLKIHLKIHTGDEYKCKECDYKTVWKQDLKKHVKIHTKDEYKCEECNYKTMRKGSLKEHVKIHTGEKYKCKDCDYKTVRKSNLKEHVKIHTGDEYKCEECDFKTVWKHSLKKHVKIHTKDEYKCEECDYKSVRKDSLKEHVKIHTCEDYKCKECDYKTVWKQDLKKHVKIHTKDEYKCEECNYKTVRKGSLKEHVKIHTGEEYKCKDCDYKTTSKHYLKIHLKIHTGDEYKCEECDFKTVWKHSLKKHVKIHTKDEYKCEECDYKTVRIDSLKEHVKIHTCEDYKCKECDYKTVWKQDLKEHVKIHTGEEYKCKDCDYKTVRKSNLKEHVKIHTGEKYKCKDCDYKTVRKCNLRVHVKIHTGEEYKCKDCDYKTIYKHYLKEHLKIHTGDEYKCKDCNYKTISKRYLKEHLKIHTGDEYKCKDCDYKTISKLCLKEHLKIHTGDEYKCEECDYKSIWKKNLMQHVKIHTGDEYKCEVCDYKSVWKKNLMQHVKIHTGEEYTCKECDYKTVWKHNLKEHIKIHVGEEYKCKDCDYKTIYKHYLKEHLKIHTGDEYKCKDCNYKTISKRYLKEHLKIHTGDEYKCKDCNYKTISKLCLKEHLKIHTGDEYKCEECDYKSVWKRNLMQHVKIHTGEEYKCKECDFKTVWKHSLKKHVKIHTKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-