Lyun003815.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010000602.1:287260-298677[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 36 3.3e-05 0.00047 20.6 1.4 1 23 8 30 8 30 0.99
2 36 3.3e-05 0.00047 20.6 1.4 1 23 35 57 35 57 0.99
3 36 3.3e-05 0.00047 20.6 1.4 1 23 62 84 62 84 0.99
4 36 3.3e-05 0.00047 20.6 1.4 1 23 89 111 89 111 0.99
5 36 3.3e-05 0.00047 20.6 1.4 1 23 116 138 116 138 0.99
6 36 3.3e-05 0.00047 20.6 1.4 1 23 143 165 143 165 0.99
7 36 3.3e-05 0.00047 20.6 1.4 1 23 170 192 170 192 0.99
8 36 3.3e-05 0.00047 20.6 1.4 1 23 197 219 197 219 0.99
9 36 0.0042 0.06 13.9 0.9 1 23 224 246 224 246 0.98
10 36 0.0042 0.06 13.9 0.9 1 23 251 273 251 273 0.98
11 36 7.8e-05 0.0011 19.4 1.9 1 23 278 300 278 300 0.99
12 36 3.3e-05 0.00047 20.6 1.4 1 23 305 327 305 327 0.99
13 36 3.3e-05 0.00047 20.6 1.4 1 23 332 354 332 354 0.99
14 36 3.3e-05 0.00047 20.6 1.4 1 23 359 381 359 381 0.99
15 36 3.3e-05 0.00047 20.6 1.4 1 23 386 408 386 408 0.99
16 36 7.5 1.1e+02 3.7 1.4 1 13 413 425 413 426 0.86
17 36 0.034 0.48 11.1 0.3 5 23 543 561 542 561 0.96
18 36 5.7e-05 0.0008 19.8 1.7 1 23 566 588 566 588 0.98
19 36 0.00018 0.0025 18.3 2.8 1 23 593 615 593 615 0.98
20 36 7.7e-05 0.0011 19.4 1.7 1 23 620 642 620 642 0.99
21 36 7.6e-05 0.0011 19.4 1.6 1 23 647 669 647 669 0.98
22 36 3.1e-05 0.00043 20.7 1.4 1 23 674 696 674 696 0.99
23 36 0.00018 0.0026 18.3 1.4 1 23 701 723 701 723 0.98
24 36 0.035 0.49 11.1 0.7 1 23 728 750 728 750 0.98
25 36 6.2e-05 0.00087 19.7 1.8 1 23 755 777 755 777 0.99
26 36 2e-05 0.00029 21.2 1.4 1 23 782 804 782 804 0.99
27 36 0.0064 0.091 13.4 0.6 1 23 809 831 809 831 0.98
28 36 0.022 0.31 11.7 0.6 1 23 836 858 836 858 0.98
29 36 7.8e-05 0.0011 19.4 1.9 1 23 863 885 863 885 0.99
30 36 0.042 0.59 10.8 0.9 1 23 890 912 890 912 0.98
31 36 0.14 2 9.1 1.0 1 23 917 939 917 939 0.98
32 36 0.057 0.81 10.4 3.4 1 23 944 966 944 966 0.98
33 36 0.042 0.59 10.8 0.9 1 23 971 993 971 993 0.98
34 36 0.0002 0.0029 18.1 0.9 1 23 998 1020 998 1020 0.99
35 36 0.007 0.1 13.3 0.8 1 23 1025 1047 1025 1047 0.98
36 36 0.022 0.31 11.7 0.6 1 23 1052 1074 1052 1074 0.98

Sequence Information

Coding Sequence
atgatTTTTACTaatgacgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagagtgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtatggaaaagtaatctaatgcaacatgtcaaaattcatactggtgacgaatataagtgtaaacagtgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacaaatataagtgtaaagagtgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggttacgattataagtgtaaagaatgtgattataaaacagtacagaaaaATATAGTATTTCAAATATTGACTTCATCTGATATAATGGATATCGACTCGGTAGACCTTATTGAAAgttgtgctataaaatcagaagtgattttaacagaaacatttccGTTTTGTGAGAAATACGAAGATTGTGGAAGTAAGGAATGGAAACCAGAGCCAGTAGATTACGAAGAATTGCTTCACCGTAAAGTAGAAAATGATCTAACGGAACCCATAGATACACATGCTACTCCGATGCAAAGAGATGTTTGTAACgactataattttataacaattggaGAGAATTCCAAAATAGATCTTGTGAAATCTTCTAAAAAcgttaaatacataaatacatatagtggcgagaaatgtgattataaaacagtgaggaaaagTTATCTAAAGCAACACGTCAAAGTTCATACTGGtaacgaatataagtgtaaagaatgtgattatagaacagTACAGagaagtaatctaatgcaacatctCAAACTTCATATTGGTGATGAATATacgtgtaaagagtgtgattataaaacggtacagAAAAGtcatctaatgcaacatgtcaaaattcatactagtgacaaatataagtgtaaagaatgtgattataaaactgtacgaaAGAGTAATATAAtgaaacatatcaaaattcatactggcgagaaatataactgtaaagaatgtaattataaaacagtacagaaaagtaatctgatgcgacatgtcaaaattcatactggtgagaaatataagtgtaaagaatgtgattataaaacggtacagaaaagtaatctaatgcagcATGTCAAAGTTCATACTGGCGAGaaatataactgtaaagaatgtaattataaaacggtacagaaaagtaatctaatgcagcATGTCAAagttcatactggtgacgaatatacgtgtaaagaatgtaattataaatcagtatggaaaagtaatctaatgctacatgtcaaaattcatactggtgacgaatataagtgtaaagaatgtaattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatactggggacaaatataagtgtaaagagtgtgattataaaacggcacggaaaagtaatctaatgcaacatgtcaaagttcatactggtgacgaatataagtgtaaagaatgtgattataaatctgtatggaaaagtaatctaatacaacatgtcaaaattcatactggcgacgaatataagtgtaaagaatgtgattataaaacggtatggaaaggacaactaaaggaacatgtcaaaattcatactggtgatgaatataagtgtaaacaatgtgattataaaacagtacagaaaagtaatctaatgcaacatgtcaaaattcatattggtgacaaatataagtgcaaagagtgtgattataaaacagtatggaagaGTAATATaatgaaacatgtcaaaattcatagtggtgacgaatataagtgtaataaatgtgtttataaatcagtatggaaaagtaatctaatgcaacatgtcaaaatccatactggtgacaaatataagtgtaaagaatgtaaatataaaacggtatggaaaagtcatctaaaggaacatgtaaaaattcataccggtgacgaatataagtgtaaagaatgtgattataaatcgatatggaaaaataatctaatgcaacatgtcaaaattcatactggcgacgaatataagtgtaaagaatgtaattataaaacggtaCAGAAAGGTAATCTAGTGCAACATGTCAAAGTTCAtactggcgatgaatataagtgtaaagaatgtgattataaatcagtatggaaaagtaatctaatgcaacatgtcaaaattcatactggcgatgaatataagtgtaaagaatgcgattataaaacggtCTGGAAAGGgcaactaaaggaacatgtcaaaattcatactggtgatgaatattag
Protein Sequence
MIFTNDEYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGDKYKCKECDYKTVWKSNLMQHVKIHTGDKYKCKECDYKTVWKSNLMQHVKIHTGDEYKCKQCDYKTVQKSNLMQHVKIHTGDKYKCKECDYKTVQKSNLMQHVKIHTGDKYKCKECDYKTVQKSNLMQHVKIHTGDEYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKSNLMQHVKIHTGYDYKCKECDYKTVQKNIVFQILTSSDIMDIDSVDLIESCAIKSEVILTETFPFCEKYEDCGSKEWKPEPVDYEELLHRKVENDLTEPIDTHATPMQRDVCNDYNFITIGENSKIDLVKSSKNVKYINTYSGEKCDYKTVRKSYLKQHVKVHTGNEYKCKECDYRTVQRSNLMQHLKLHIGDEYTCKECDYKTVQKSHLMQHVKIHTSDKYKCKECDYKTVRKSNIMKHIKIHTGEKYNCKECNYKTVQKSNLMRHVKIHTGEKYKCKECDYKTVQKSNLMQHVKVHTGEKYNCKECNYKTVQKSNLMQHVKVHTGDEYTCKECNYKSVWKSNLMLHVKIHTGDEYKCKECNYKTVQKSNLMQHVKIHTGDKYKCKECDYKTARKSNLMQHVKVHTGDEYKCKECDYKSVWKSNLIQHVKIHTGDEYKCKECDYKTVWKGQLKEHVKIHTGDEYKCKQCDYKTVQKSNLMQHVKIHIGDKYKCKECDYKTVWKSNIMKHVKIHSGDEYKCNKCVYKSVWKSNLMQHVKIHTGDKYKCKECKYKTVWKSHLKEHVKIHTGDEYKCKECDYKSIWKNNLMQHVKIHTGDEYKCKECNYKTVQKGNLVQHVKVHTGDEYKCKECDYKSVWKSNLMQHVKIHTGDEYKCKECDYKTVWKGQLKEHVKIHTGDEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-