Lyun000443.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- -
- Assembly
- GCA_013368075.1
- Location
- JABVZV010000047.1:1789190-1792062[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.014 0.2 12.3 0.5 2 23 10 31 9 31 0.96 2 34 0.00022 0.0031 18.0 2.7 2 23 37 58 36 58 0.97 3 34 0.00024 0.0034 17.9 0.9 2 23 64 85 63 85 0.97 4 34 9.6e-05 0.0014 19.1 1.0 2 23 91 112 90 112 0.97 5 34 9.6e-05 0.0014 19.1 1.0 2 23 118 139 117 139 0.97 6 34 0.00021 0.003 18.0 1.2 2 23 145 166 144 166 0.97 7 34 0.00015 0.0021 18.5 2.7 2 23 172 193 171 193 0.97 8 34 0.012 0.17 12.5 0.8 2 23 199 220 198 220 0.96 9 34 0.00017 0.0024 18.3 1.4 2 23 226 247 225 247 0.97 10 34 9.6e-05 0.0014 19.1 1.0 2 23 253 274 252 274 0.97 11 34 0.015 0.21 12.3 0.6 2 23 280 301 279 301 0.96 12 34 0.00015 0.0021 18.5 2.7 2 23 307 328 306 328 0.97 13 34 0.012 0.17 12.5 0.8 2 23 334 355 333 355 0.96 14 34 0.00012 0.0017 18.8 2.3 2 23 361 382 360 382 0.97 15 34 0.00049 0.007 16.9 0.7 2 23 388 409 387 409 0.97 16 34 0.00049 0.0069 16.9 0.7 2 23 415 436 414 436 0.97 17 34 0.00017 0.0024 18.3 1.4 2 23 442 463 441 463 0.97 18 34 9.6e-05 0.0014 19.1 1.0 2 23 469 490 468 490 0.97 19 34 0.00012 0.0017 18.8 2.3 2 23 496 517 495 517 0.97 20 34 0.00049 0.007 16.9 0.7 2 23 523 544 522 544 0.97 21 34 0.00049 0.0069 16.9 0.7 2 23 550 571 549 571 0.97 22 34 0.00017 0.0024 18.3 1.4 2 23 577 598 576 598 0.97 23 34 9.6e-05 0.0014 19.1 1.0 2 23 604 625 603 625 0.97 24 34 0.00012 0.0017 18.8 2.3 2 23 631 652 630 652 0.97 25 34 0.00024 0.0034 17.9 0.9 2 23 658 679 657 679 0.97 26 34 9.6e-05 0.0014 19.1 1.0 2 23 685 706 684 706 0.97 27 34 0.00025 0.0035 17.8 1.8 2 23 712 733 711 733 0.97 28 34 0.00049 0.007 16.9 0.7 2 23 744 765 743 765 0.97 29 34 0.00049 0.0069 16.9 0.7 2 23 771 792 770 792 0.97 30 34 0.00017 0.0024 18.3 1.4 2 23 798 819 797 819 0.97 31 34 9.6e-05 0.0014 19.1 1.0 2 23 825 846 824 846 0.97 32 34 0.00012 0.0017 18.8 2.3 2 23 852 873 851 873 0.97 33 34 0.00024 0.0034 17.9 0.9 2 23 879 900 878 900 0.97 34 34 5.2e-05 0.00074 20.0 1.5 2 23 906 927 905 927 0.97
Sequence Information
- Coding Sequence
- atgaaaattcacacaggtgataaattgaagtgtacagaatgtgactacaaaacccTTAGGAACGGAGATCTTAActtgcatatgaaaattcacacggGTGAAATattgaagtgtaaagaatgtgactacaaaactactaggaaatatgattttaaattgcatatgaaaattcacactggtgataaattgaagtgtactgaatgtgactacaaaacccCTAGGAAACGAGATCTTAActtgcatatgaaaattcacacgggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAActtgcatatgaaaattcacacaggtgataaattgaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAActtgcatatgaaaattcacactggtgataaattgaagtgtactgaatgtgactacaaaacctCTAGGAAACGAGATCTTAACttgcatataaaaattcatacaggtgaaatattgaagtgtaaagaatgtgactacaaaactactaggaaatatgattttaacacacacatgaaaattcacacaggtgataaaTTGAAGTGTACGGTATGTGACTACAAAACCCTTAGGAAAGGAGATCTTAAgttgcatatgaaaattcacacaggtgaaatattgaagtgtaaagaatgtgactacaaaactacTAGGCAATATGATTTGAACacacatgtgaaaattcacacaggtgaaaaattaaagtgtaaagaatgtgactacaaaacgcCTAGAAAATATGATCTTAActtgcatatgaaaattcacacaggtgataaaTTGAAGTGTACGGTATGTGACTACAAAACCCTTAGGAAAGGAGATCTTAActtacatatgaaaattcacacggGTGAAATattgaagtgtaaagaatgtgactacaaaactaccagaaaatatgattttaacacacacatgaaaattcacacaggtgataaaTTGAAGTGTACGGTATGTGACTACAAAACCCTTAGGAAAGGAGATCTTAAgttgcatatgaaaattcacacaggtgaaaTATtgaagtgtaacgaatgtgactacaaaactactaggaaatatgattttaacacacatatgaaaattcacacaggtgataaattgaagtgtacggaatgtgactacaaaacccCTAGGAAACGAGATCTTAACttgcatataaaaattcatacaggtgataaattgaagtgtacggaatgtgactacaaaacccCTAGGAAACGAGATCTTAAcatgcatataaaaattcatacaggtgaaatattgaagtgtaaagaatgtgactacaaaactacTAGGCAATATGATTTGAACacacatgtgaaaattcacactggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAActtgcatatgaaaattcacacaggtgaaaTATtgaagtgtaacgaatgtgactacaaaactactaggaaatatgattttaacacacatatgaaaattcacacaggtgataaattgaagtgtacggaatgtgactacaaaacccCTAGGAAACGAGATCTTAACttgcatataaaaattcatacaggtgataaattgaagtgtacggaatgtgactacaaaacccCTAGGAAACGAGATCTTAAcatgcatataaaaattcatacaggtgaaatattgaagtgtaaagaatgtgactacaaaactacTAGGCAATATGATTTGAACacacatgtgaaaattcacactggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAActtgcatatgaaaattcacacaggtgaaaTATtgaagtgtaacgaatgtgactacaaaactacTAGGAAATACGATTTTAacacacatatgaaaattcacacaggtgataaattgaagtgtacagaatgtgactacaaaacccCTAGGAAACGAGATCTTAActtgcatatgaaaattcacgctggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAActtgcatatgaaaattcacactggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctagaaaatatgattttaacacacatatgaaaattcacacaggtgataaattgaagtgtgataaattgaagtgtacggaatgtgactacaaaacccCTAGGAAACGAGATCTTAACttgcatataaaaattcatacaggtgataaattgaagtgtactgaatgtgactacaaaacccCTAGGAAACGAGATCTTAAcatgcatataaaaattcatacaggtgaaatattgaagtgtaaagaatgtgactacaaaactacTAGGCAATATGATTTGAACacacatgtgaaaattcacactggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAActtgcatatgaaaattcacacaggtgaaaTATtgaagtgtaacgaatgtgactacaaaactacTAGGAAATACGATTTTAacacacatatgaaaattcacacaggtgataaattgaagtgtacagaatgtgactacaaaacccCTAGGAAACGAGATCTTAActtgcatatgaaaattcacgctggtgaaaaattaaagtgtaaagaatgtgactacaaaacacctaGAAAATATGATCTTAACTTGCATATGAAAACTCACACATGTGAAAAATTAGAGTGTAAATAG
- Protein Sequence
- MKIHTGDKLKCTECDYKTLRNGDLNLHMKIHTGEILKCKECDYKTTRKYDFKLHMKIHTGDKLKCTECDYKTPRKRDLNLHMKIHTGEKLKCKECDYKTPRKYDLNLHMKIHTGDKLKCKECDYKTPRKYDLNLHMKIHTGDKLKCTECDYKTSRKRDLNLHIKIHTGEILKCKECDYKTTRKYDFNTHMKIHTGDKLKCTVCDYKTLRKGDLKLHMKIHTGEILKCKECDYKTTRQYDLNTHVKIHTGEKLKCKECDYKTPRKYDLNLHMKIHTGDKLKCTVCDYKTLRKGDLNLHMKIHTGEILKCKECDYKTTRKYDFNTHMKIHTGDKLKCTVCDYKTLRKGDLKLHMKIHTGEILKCNECDYKTTRKYDFNTHMKIHTGDKLKCTECDYKTPRKRDLNLHIKIHTGDKLKCTECDYKTPRKRDLNMHIKIHTGEILKCKECDYKTTRQYDLNTHVKIHTGEKLKCKECDYKTPRKYDLNLHMKIHTGEILKCNECDYKTTRKYDFNTHMKIHTGDKLKCTECDYKTPRKRDLNLHIKIHTGDKLKCTECDYKTPRKRDLNMHIKIHTGEILKCKECDYKTTRQYDLNTHVKIHTGEKLKCKECDYKTPRKYDLNLHMKIHTGEILKCNECDYKTTRKYDFNTHMKIHTGDKLKCTECDYKTPRKRDLNLHMKIHAGEKLKCKECDYKTPRKYDLNLHMKIHTGEKLKCKECDYKTPRKYDFNTHMKIHTGDKLKCDKLKCTECDYKTPRKRDLNLHIKIHTGDKLKCTECDYKTPRKRDLNMHIKIHTGEILKCKECDYKTTRQYDLNTHVKIHTGEKLKCKECDYKTPRKYDLNLHMKIHTGEILKCNECDYKTTRKYDFNTHMKIHTGDKLKCTECDYKTPRKRDLNLHMKIHAGEKLKCKECDYKTPRKYDLNLHMKTHTCEKLECK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -