Lyun008822.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lamprigera yunnana
Gene Symbol
-
Assembly
GCA_013368075.1
Location
JABVZV010001556.1:298889-315430[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 41 0.00078 0.011 16.3 1.2 1 23 27 49 27 49 0.99
2 41 0.0055 0.078 13.6 0.9 1 23 59 81 59 81 0.99
3 41 1.5e-05 0.00021 21.7 1.7 1 23 86 108 86 108 0.99
4 41 1.5e-05 0.00021 21.7 1.7 1 23 113 135 113 135 0.99
5 41 0.0055 0.078 13.6 0.9 1 23 145 167 145 167 0.99
6 41 1.5e-05 0.00021 21.7 1.7 1 23 177 199 177 199 0.99
7 41 1.5e-05 0.00021 21.7 1.7 1 23 204 226 204 226 0.99
8 41 1.5e-05 0.00021 21.7 1.7 1 23 231 253 231 253 0.99
9 41 0.17 2.4 8.9 3.2 1 23 258 280 258 280 0.98
10 41 0.0055 0.078 13.6 0.9 1 23 285 307 285 307 0.99
11 41 1.5e-05 0.00021 21.7 1.7 1 23 312 334 312 334 0.99
12 41 1.5e-05 0.00021 21.7 1.7 1 23 339 361 339 361 0.99
13 41 0.0013 0.019 15.5 4.3 1 23 366 388 366 388 0.98
14 41 0.0055 0.078 13.6 0.9 1 23 393 415 393 415 0.99
15 41 4.8e-05 0.00068 20.1 1.3 1 23 420 442 420 442 0.98
16 41 9.5e-05 0.0014 19.1 1.0 1 23 447 469 447 469 0.99
17 41 0.17 2.4 8.9 3.2 1 23 474 496 474 496 0.98
18 41 0.0055 0.078 13.6 0.9 1 23 501 523 501 523 0.99
19 41 1.5e-05 0.00021 21.7 1.7 1 23 528 550 528 550 0.99
20 41 1.5e-05 0.00021 21.7 1.7 1 23 555 577 555 577 0.99
21 41 0.0013 0.019 15.5 4.3 1 23 587 609 587 609 0.98
22 41 0.0055 0.078 13.6 0.9 1 23 614 636 614 636 0.99
23 41 1.5e-05 0.00021 21.7 1.7 1 23 641 663 641 663 0.99
24 41 1.5e-05 0.00021 21.7 1.7 1 23 668 690 668 690 0.99
25 41 0.00093 0.013 16.0 1.5 1 23 695 717 695 717 0.99
26 41 0.17 2.4 8.9 3.2 1 23 722 744 722 744 0.98
27 41 0.0053 0.075 13.6 0.7 1 23 749 771 749 771 0.98
28 41 1.5e-05 0.00021 21.7 1.7 1 23 776 798 776 798 0.99
29 41 0.00093 0.013 16.0 1.5 1 23 803 825 803 825 0.99
30 41 0.0013 0.019 15.5 4.3 1 23 830 852 830 852 0.98
31 41 0.0019 0.027 15.0 1.0 1 23 857 879 857 879 0.99
32 41 1.6e-05 0.00023 21.6 1.3 1 23 884 906 884 906 0.98
33 41 0.00093 0.013 16.0 1.5 1 23 911 933 911 933 0.99
34 41 5.5e-05 0.00078 19.9 2.3 1 23 938 960 938 960 0.99
35 41 0.02 0.29 11.8 0.9 1 23 965 987 965 987 0.98
36 41 0.00016 0.0022 18.5 1.4 1 23 992 1014 992 1014 0.99
37 41 0.014 0.2 12.3 0.8 1 23 1019 1041 1019 1041 0.98
38 41 5.5e-05 0.00078 19.9 1.6 1 23 1046 1068 1046 1068 0.99
39 41 0.072 1 10.1 1.0 1 23 1073 1095 1073 1095 0.98
40 41 0.00093 0.013 16.0 1.5 1 23 1100 1122 1100 1122 0.99
41 41 0.0005 0.007 16.9 5.2 1 23 1127 1149 1127 1149 0.99

Sequence Information

Coding Sequence
ATGGTAAAGTATGAGGCACAAAGTAGTTATTTGGGTACTATTCTCTATATAGAGAGTAGGGGCGAAGGAGgtgatgaatataaatgtaacgaatgtgattataaaacggtgcgaaaagatcgtctaaaggaacatgtaaaaattcatacaggtgatgaatataaatgtgttacatataagtgtaaagaatgtgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcattcaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatctgatgaatataaatgtaaagaatgtgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcatacaggtgatgaatataaatgcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacagctgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacagctgatgaatataaatgtaaagaatgtgattacaaaacagtatgGCAATGCAATCTAAAGAACCATGaaaaaattcatgcaggtgttacatataagtgtaaagaatgtgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacagctgatgaatataaatgtaaagaatgtgattacaaaacagtacgGCAATGCAATCTAAAGAACCATGaaaaaattcatgcaggtgttacatataagtgtaaagaatgtgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcatacaggcgatgaatataactgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgctgaatataaatgtaacgaatgtgattataaaacggtgcgaaaagatagtctaaaggaacatgtaaaaattcatacaggtgaaaaatataaatgtaaagaatgtgattacaaaacagtatgGCAATGCAATCTAAAGAACCATGaaaaaattcatgcaggtgttacatataagtgtaaagaatgtgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggcgatgaatataaatctgatgaatataaatgtaaagaatgtgattacaaaacagtacgGCAATGCAATCTAAAGAACCATGaaaaaattcatgcaggtgttacatataagtgtaaagaatgtgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcattcaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacagctgatgaatataaatgtaaagaatgtgattacaaaacagtatgGCAATGCAATCTAAAGAACCATGaaaaaattcatgcaggtgttACATAtcagtgtaaagaatgcgattatagaacagtgtggcaaagtagtctaaaaaatcatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAggagacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacagctgatgaatataaatgtaaagaatgtgattacaaaacagtacgGCAATGCAATCTAAAGAACCATGaaaaaattcatgcaggtgttacatataagtgtaaagaatgcgattatagaacagtgtggcaaagtaatctaaaaaatcatgtcaaaattcatacaggcgatgaatataaatgtaaagaatgtgattataaaacagtgcaaaaagaTAACCTAAGGAGACATGTCAacattcatacaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacggtgcgaaaagattatctaaaacgacatgtcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattataaaacagtgtggcaaagtagtctaaaaAATCATggtaaaattcatacagatgatgaatataaatgtaaagaatgtgattacaaaacggcgcgaaaagattatctaaaagaacatgtcaaaattcatacaggtgatgaatataagtgtaaagaatgtgattataaaacagtgtggcaaagaaatctaaaaattcatgtcaaaattcatacaaatgatgaatataaatgtaaagaatgtgattacaaaacggTGCGAAAAGATTATCTAAaagaacatatcaaaattcatacaggtgatgaatataaatgtaaagaatgtgattatcaaACAGTGTGGCGAAGAAATCTAAAAatgcatgtcaaaattcataaaggtgatgaatataaatgtaaagaatgtgactataaaacagtgcgaaaagatcgtctaaaggaacatgttaaaattcatacaggtgatgaatataaatgtaaagaatgtcactataaaacagtgcgaaaatatAGCTTAAGaagacatgtcaaaattcataacaggtga
Protein Sequence
MVKYEAQSSYLGTILYIESRGEGGDEYKCNECDYKTVRKDRLKEHVKIHTGDEYKCVTYKCKECDYRTVWQSSLKNHVKIHSGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKSDEYKCKECDYRTVWQSSLKNHVKIHTGDEYKCDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTADEYKCKECDYKTVQKDNLRRHVKIHTADEYKCKECDYKTVWQCNLKNHEKIHAGVTYKCKECDYRTVWQSSLKNHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTADEYKCKECDYKTVRQCNLKNHEKIHAGVTYKCKECDYRTVWQSSLKNHVKIHTGDEYNCKECDYKTVQKDNLRRHVKIHTGAEYKCNECDYKTVRKDSLKEHVKIHTGEKYKCKECDYKTVWQCNLKNHEKIHAGVTYKCKECDYRTVWQSSLKNHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKSDEYKCKECDYKTVRQCNLKNHEKIHAGVTYKCKECDYRTVWQSSLKNHVKIHSGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVRKDRLKEHVKIHTADEYKCKECDYKTVWQCNLKNHEKIHAGVTYQCKECDYRTVWQSSLKNHVKIHTGDEYKCKECDYKTVQKDNLRRHVKIHTGDEYKCKECDYKTVRKDRLKEHVKIHTADEYKCKECDYKTVRQCNLKNHEKIHAGVTYKCKECDYRTVWQSNLKNHVKIHTGDEYKCKECDYKTVQKDNLRRHVNIHTGDEYKCKECDYKTVRKDRLKEHVKIHTGDEYKCKECDYKTVRKDYLKRHVKIHTGDEYKCKECDYKTVWQSSLKNHGKIHTDDEYKCKECDYKTARKDYLKEHVKIHTGDEYKCKECDYKTVWQRNLKIHVKIHTNDEYKCKECDYKTVRKDYLKEHIKIHTGDEYKCKECDYQTVWRRNLKMHVKIHKGDEYKCKECDYKTVRKDRLKEHVKIHTGDEYKCKECHYKTVRKYSLRRHVKIHNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-