Lyun015790.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- SCRT1
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002186.1:3089884-3103117[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1e-05 0.039 14.1 0.7 13 38 320 342 313 347 0.88 2 5 0.012 46 4.3 0.6 17 28 355 366 344 381 0.78 3 5 0.0054 21 5.4 0.2 18 28 382 392 372 403 0.81 4 5 8e-05 0.31 11.2 0.3 19 41 411 430 399 433 0.89 5 5 0.079 3.1e+02 1.6 1.2 14 29 434 449 430 460 0.75
Sequence Information
- Coding Sequence
- ATGGAACGTTcggatcaaaaagaaaaaaaagGTTACCAACAAGAATTTATTCCCAACGGATCCCTGTCGATTAAAACCGAAGATGTCATCTCGCAACAAGATGGTGGCATTCCCATTTTTAGAATACGAAGTGCCGAAGAAACCGAAGCTGCACACGATTTGTTATCCTTGTCGCAAAGTTTACCACCGTTACCTCCGCCAAGTATTGTCACAATACATCAAAGCATCCCCCATGGAGAAACGCCGTCATCTCCCACTCGATCTTATCGACCCCTATCCCCCGAACAAATTCCATCCTATCGTACCTCTTCACCATTACCCGTAACAATTCCAAATTATCAACCCTCTATTGTGTATGTAGTACAAATCCCACAAGCGCCGACACCTCCTACGTCAGAATGCTCATCAGATACAGAAAATCATACGTTACACATATGTACAGAAGATAATTCTGAACAGGAAGTACTAGCAGTTCAAAGCTTTACGACTAATTCTATACAAGAAACCATTTCAATTCAAAGCATTTCCACAAATACCGACGATATTTTGATACTTCCTCTGTCTCCCGAGTCTGATAACCGACATACAGATGTGattaaaacagaaaattctATTATATCTACCGAATACGataacaaaaagataaaagcAACAACAAGCGTAATTGTTAGTCCTGTTAAATTAAAACCGCCCCCGATCAGACATCAGTCAGTTATTATATCGGCGCCAACTTTAAACGTTTCCGATAAGAAAACGCGAAAGAATAATGCAAAAGCTACTAAAgtgattaaaaatatcaacaataacGACGATGAAATTAGTGATAACAATATAGAAAAAGAAGTGGTCGAACGTGCCGCACCATCTGCGTCGAAAAAATCTAGAACGAAATTCTTCAAAGTGGTACCAGTGGAGTCGGATGGCAATTCGAAAGAGGAAGCAAAAGAAGACCTATCAAAGTCGACCCGTTACGTGTGCATGGACTGCGGCAAGCAATACGCAACCTCCAGCAACCTTTCGAGGCACAGGCAAACACACAGAAGTCTCGATTCACAATCGGCCAAGAAATGCATGACTTGCGGTAAGGCCTATGTTAGTATGCCAGCTTTGGCGATGCACGTTCTGACGCATAAGCTAGCACATAGTTGTGGCGTTTGTGGAAAGCAGTTCTCTCGACCGTGGCTATTACAGGGCCATTTACGTTCGCACACGGGCGAAAAACCGTACGGATGCGCGCACTGCGGTAAAGCATTTGCGGATCGTTCGAATTTACGTGCGCACATGCAGACCCACTCGTCAGACAAAAATTTCCATTGtccaaaatgtaataaaacgtTTGCTTTAAAGTCGTACCTAACTAAACACCAAGAATCGGCGTGTTGGTTTTACAATAAAGATTGCGATTTCGACGATACGACCGATCTCGTGGCCGAAAATGTGCGGAAAATTTTGGGCAACTCAAATGATTAA
- Protein Sequence
- MERSDQKEKKGYQQEFIPNGSLSIKTEDVISQQDGGIPIFRIRSAEETEAAHDLLSLSQSLPPLPPPSIVTIHQSIPHGETPSSPTRSYRPLSPEQIPSYRTSSPLPVTIPNYQPSIVYVVQIPQAPTPPTSECSSDTENHTLHICTEDNSEQEVLAVQSFTTNSIQETISIQSISTNTDDILILPLSPESDNRHTDVIKTENSIISTEYDNKKIKATTSVIVSPVKLKPPPIRHQSVIISAPTLNVSDKKTRKNNAKATKVIKNINNNDDEISDNNIEKEVVERAAPSASKKSRTKFFKVVPVESDGNSKEEAKEDLSKSTRYVCMDCGKQYATSSNLSRHRQTHRSLDSQSAKKCMTCGKAYVSMPALAMHVLTHKLAHSCGVCGKQFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSSDKNFHCPKCNKTFALKSYLTKHQESACWFYNKDCDFDDTTDLVAENVRKILGNSND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00855114;
- 90% Identity
- iTF_00855114;
- 80% Identity
- iTF_00855114;