Basic Information

Insect: Lamprigera yunnana
Gene Symbol: ham
Assembly: GCA_013368075.1
Location: JABVZV010000935.1:669408-672769[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.5e-06 0.014 15.6 0.2 18 41 243 263 231 265 0.87

2 3 2.3e-06 0.0091 16.1 2.2 17 44 270 294 263 294 0.88

3 3 0.049 1.9e+02 2.3 1.6 13 41 295 320 292 322 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.5e-06	0.014	15.6	0.2	18	41	243	263	231	265	0.87
2	3	2.3e-06	0.0091	16.1	2.2	17	44	270	294	263	294	0.88
3	3	0.049	1.9e+02	2.3	1.6	13	41	295	320	292	322	0.82

Sequence Information

Coding Sequence: ATGCGAAGAAGAGTTTCTCCAATACTTGCGGTTATTCTTCCCATGAGTGTGGTGGATACGGGCCTTCCGTGGCTTCGGTACCTTCCTCCGCTGCCTTTAAATCGACCATTAACTATGCGCGAAAAAGACTCGTCACCACGTAAAATGTTGGTGGCAGCGGGAGGATACAGTTCTCCGAAACAGGCGGCTGTTTATCCCCTGTCGATAAGAGTTCCTCCGGGCGACGAGATGCCGTTCGACTTGTCGCGCAACACGAGATCTCCGGGTCCGCACATGTCGCCGGCCGGTCGGCCGCCGCCCGGTCCGCAAGACGCCGAAGATCAGCCGTTAGATTTACGAGTCGAGCACAAAAAATGCAGAAGGCAACACGTCGAGGACGAAAATCGTAACCTGATCTCGCCGGCTAGCGTCAACAGCGACAAGGAAGACGTCCCCGCCGAAGATCACAACGTCAAACTGCAAATGCCAAATTACCCTGTGCTTTTCCCTCCGCAACCGATTCATCCGATGATGCTGGAAGCGATGTATCGCGCTCAAGGGTCGGATAAGATGCCCAGGCTGCCGTTATATCCGAACTCTCCTCCAGGTTATCCGCAAAGATATCCGTTTCTCAGTTCTACTATGTTAAGTCCGCCCGTGACACAAGTTCCTTTCGATATGTTGCGAAATCCGATGCCACAACCCAAAGTGTTTGCGGACACGTCCGGGAAAATGAAAGATAGGTACGCTTGTAAGTTTTGCGGTAAAGTTTTTCCGCGCTCAGCAAATTTAACCCGCCATTTACGTACGCACACTGGAGAGCAACCGTACAAGTGTAGATATTGCGAACGTTCCTTCAGTATTTCTAGCAATTTGCAAAGACACGTTCGTAACATacacaacaaagaaaaaccCTTTAAGTGTCCTTTGTGTGAACGTTGTTTCGGACAGCAGACTAATTTGGATAGACACCTGAAGAAACACGAGTCGGACGGTCCGACAATTTTGGACGAACGCAACGTGCAAAGACGAAATTTGTCCAGGGGACACGGCGAAGACTCGTACTTCGAAGAAATACGTTCCTTTATGGGCAAAGTAACCGACGGCCGCATGTTGTCTCAGCTACAATCGCCTAGACCTCTATCAAACTTTTCCTTATCTTTACCGGGTAAATTTTACGAAATGCCGAAAAGTCAAGAAAAAACTCCCGAAGAGAGCAAGTACTTTTCggaaaaagataatttttccTCGAGGTCTTCGACCAATTCGGAGTCGACCAAAGATGAAGACAGCGAAAACGTGTGCGCCCCACAAGACGAAGAAACGCATCGTCTTTCGAACGACGCCAACACTTGA
Protein Sequence: MRRRVSPILAVILPMSVVDTGLPWLRYLPPLPLNRPLTMREKDSSPRKMLVAAGGYSSPKQAAVYPLSIRVPPGDEMPFDLSRNTRSPGPHMSPAGRPPPGPQDAEDQPLDLRVEHKKCRRQHVEDENRNLISPASVNSDKEDVPAEDHNVKLQMPNYPVLFPPQPIHPMMLEAMYRAQGSDKMPRLPLYPNSPPGYPQRYPFLSSTMLSPPVTQVPFDMLRNPMPQPKVFADTSGKMKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHESDGPTILDERNVQRRNLSRGHGEDSYFEEIRSFMGKVTDGRMLSQLQSPRPLSNFSLSLPGKFYEMPKSQEKTPEESKYFSEKDNFSSRSSTNSESTKDEDSENVCAPQDEETHRLSNDANT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01284919;
90% Identity: iTF_00855363;
80% Identity: iTF_00855363;