Basic Information

Gene Symbol
ncor1
Assembly
GCA_013368075.1
Location
JABVZV010001948.1:1108845-1162596[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.4e-08 1.2e-05 25.5 0.0 3 43 430 470 429 472 0.97
2 2 7.3e-07 0.00059 20.0 0.0 3 42 814 852 813 856 0.95

Sequence Information

Coding Sequence
ATGGAAACTGTTCATTCTGTACGAATTGACCATGGGCCGGTTCAGACAAACGCAATGCCCTATCCTCAAAGACAACCGCCAACTCACAGGCCTAACCATAGTCAGCAGTCGGATCTCTACAAACCGTCACGATCACCACTGACAAATGCTGCCCGTTACCCATATCCTGTATCACCGCAACTACAAACTTCTGTTGCTCAAGTATCAAGTCAACGTTACAATGTTCCCCCAACACCGTCGTTTCCGCCGGCGGGTTACCGCGACTACCGCCAACCTAGAATATCGCTCCTTCACCCCGATTATAGTAACCGAGCACGAGAATTACAAGCCGGTGGACCCATCATGCATCACCTCGATTCTATGTCGAACCAGGGCCAACAACCGTTCAAGAAGATGCGGCTCCAAGATCAAAAGGATATACAACCACTACGGATCGACACAAGGGAATCGACGGGCGCGTACAATCCTCAGGTGGAAGCGATCTCGCCGACCCTACCCGATCACATGCAAGAAGATCAAGCATTTCGCAGCACAAAGGACGAACTGCTGCAGCAAATTGGAAAGGTCGACAGGGAAATAGCGAAGGCCGAAGCCCAAATCGGCATATTAAAGAAGAAACAGCAGGAATTGGAAGAGTTGGCCCTAAAGCCGTCCACGAAGCAGGAACAACCGGAAGATACACAACCGAAGCATCAGAGTTTGGCCCAGAAGATTTACGCTGAGAATAGAAAACGGGCGCAGAACGCCCACGCTAAATTGGACAGTTTGGGAACAAAGTTGGAGTTCCCCATGTACAACCAACCTTTGGATTCATCACTGTACCAGGAGAACTGGAGGAAGCATGTCGGCTTTAAGAAACGCTTGTTGGAGTACTTTAAGAAGAGGCATGTTGAGAAAGAGTCGAGAAATTCGTACCTGACTGAAACTTACAGTAAACTGATGCAGGAGTGGCTGAGGAAAGTTGACAAGATCGAGTCGGGCGTGAAGAGGAAAGCAAAAGAGGCCAAAAATAGAGATTTCTTCGAGAAAGTCTTTCCCGAGCTGCGGAAGCAACGGGAAGATAAGGAAAGatttaacagaGTTGGTGCACGCATCAAATCGGAGGCTGACCTGGAGGAGATTATGGATAACTTGCAAGAGCAGGCTTTGGAGGATAAGAAAATGCGGAGCTATGCCGTGATACCACCAATACTGTTGGATACCAAGGAACGTAAGATAACATATAGAAACAACAATGGGCACATAGTCGATATGGAGGTTGAATATAAGAGTAGACAGTTCCTGAACGTGTGGACGCCTAGCGAGAAAGAATTATTCAAGGAGAAGTACTTGCAGCATCCGAAGAATTTTGGTGTTATTGCATCATATTTAGATAGGAAATCAGTGGCTGATTGTgtccaatattattatttaagtaaaaagACAGAGAACTATAAACAGTTGTTAAGAAAGTCAAGGCAGCGAACGCGATCATCTAGAAATAATACCCAAAAAGTGAATAGTAGTGCTAGTACGTCTGTAGTGGATATTCTAACAACAGGGGTGACAACAAGACTGCAACGAGAGCAGCAAAAGACGACTGTGCAGCAGAATAGGGAGACGCCGGAATCAATTCCCACTTCCACATCTACAACATGCAGTGCTCCAATTGTCAGTGTATCTAGTGCAGCAAGTACCAATGGTGCAATTGTGGGAAATCCAAATAGCCCGCTTATGGTATCATCGAACAGTTCACCCGTGTCGGTTACCTCAAGCACAGTGAATTCAGTGGCGATTACGACAACTTCAACAACTTTGAGTACGGCTGTGAATGTACCTGTGTCAAAATCTCCTAGACCCATTGATAACGCAGTCAGTGGTGataatattagtgattttaatttatttgaagatGATGCCAGTACTAGAAAGGGGCAGGACTCTGTTGACGCTAACACAATGAGTGACACTTCCACGCAAGGCATGATTAGTATTAAAAAAGACATTGATTTAATGGAAGAAAATAACATTAGcgATCATGTAACAAGTgaaacgaagaagaagaaggaacgAAGAAAAGACAAGGAGAATGTAACCATTGAATCGAGCGAGGATGAGCCTTTGGACATGCAAGataaaaCTTTACCAGGAGGACAATGCCTGGTGTGTGCTTTGCAACTTGGTCCTCAGCTTCAGTCTCGTCCTCTTATACCGAACCACGCTTCTTTATATGGACTTCGAGAGGAACAAGTGCCCCCAAATTCCAGAGTGTGCAACATCTGTCGATGTAAAAGTGTACGTTCGCGTTACACTCATTGTCCACTACCTAACTGCCCCAACTCCAGGGGCAGGATAAAAAGATTGCGTTCATTTCCTCAACGACTGATGGAATTGCCTTCTGATGTTAGAGATCCTATTCTCGCAGAATTTCATGTGCCCAGTGGTGTGAGTCCTGTTGAAGAGTGGCCAGAAGAAGACATCAATCAGTTGAAAAATGTACTAACAGAGGTCGGTGCCAATTGGCAGCTAATTGGGGAGCGGTTAAATAAGCCTCCGCAACAAGTCCGAAATTTTTACACAGCTAACCGTAAACGTTTAAACTTGGAAATGTGTCTCGGTGATCGAAAGCCGGCACTTACCGATGAAGAAGAGAGTGGGAGTAGCACGAGCAGCTGTGAGGAGCCGATGCAAGATAACAATTCTTCGGATACCGCAAGTGCTGGCAGTCCACCTACGATCACCGAGCAGATTCCCCAACTGCCCACAAAAAAGGAAGATTATGATTCGTCTGCAACTGAAACTGCTGATGAGGGACAAACACCAGATCACTATCAAAGTTCAGCCACTATTACAGTAGTCAATAATGATGGTCAATCACGACAAAATAGCTCACCTCTTACTGTCAAGGATCTTATGCTTAATGTTATCGAATTTTCTCTCATGAAAAATGCTGGCTCTCAACAATCTCAGCATCCACCAACCAGTGGAATGGCTCCGACAATTTCCTCCATCCTTAACAATGATTCCAATGAAGTCACCATAGTCAGCGAATACAATTTGAATAATATGCAACCACCCAGAGGTAGTCGCAATGAAATTTCAATCACCAAACTGGTAACACCTTTAATTGCCGCAACCATAACGCCTGTCCCCCCTTCAGGTCAAATTACACAATCGCTTTCGCAATCTGAACATTCTAACAGAGATGACTTAGTTGTATTTCAAGTGCAAGATAATAGAGAACCAGAAACATTAGATTTAAGTATCAAAAAACCAAGAGAACTTCCACCACCAGCTCATGCAAAACTACAATCTCAAATGCATCGTTCTGAGGCATACATTGGGTACCACCAAGAGCGTAAAAGTCCTGCTGTATATGTGTCCACTATTCCTAGAGTTCAACCTAAACTACCTAGTCCAAAGCTGGCAAATCCAAAAGCAGGATCTATTACCCTTGGCACCCCAATTATCAGTCAACCGAGGTATGAGGGTTTATTACGACAAATGACACCCGAACCAAAAATGGGTTCTATAACGCAAGGCACTCCAATTCATGTTCCTCACATGCAAGACAAGCGAATTTATGATTATTACAATAAACGTCCACCTATGCCTCTTAATGTACCACCGCAAAGTGCAAATTATCAGCCCCAATATCGTCAGCCGTCATATTCGGTTGAGCAACAATTAAGTTCACGACAGATTATAATGAATGATTATATCACATCACAACAGATGCTGGGTCGAAGAAATGATAAACCGCAGTACTATGCAACGACAAGTCCCCATAGGACTCCGCCGCCTCAGCAAGCTCAGCAACGACAGGGTGTAATTCAACGACATACTCGACCTCATTACCCACCTGGACACGAAGCATTAGGTTCGCTTGTGGATGTTGCTGTGCAACAACCAAGTCTACCAGTTCCCAATTCGCCACATGAGGGTTTGGGTAAAACTATGGCTGATAATTTACTTGAACAGCcccatcgttttcaaatcattCAGCATCAGCAACAGCTGAGGCAGCAGCAGCAGCGATTGGAAGCCGAAAGACGAGCGTATCATCAACAACAGCAGGCACGGCACCAACAAGCCTCACGAAACGATTCATCTATAACAGCGGCCAGCCTTATTGATGCAATTATAACACATCAGATTAATCAGGCTGCTGAAGGTGGTAGAGAGGTAGTGTCGAATAGTAGAGAGCCTCCACGTCCGGGTGATCGTCTCTTCCAGAGTTTTCATCGTGATCAACCGGTAGCACCACAGGTTGATAACAATGGTGAGCGATCGCCGTCAGTAATAAGTGTTGATTTAGAAAGCGAGTCAACTACAAAGAATCTAACAATTAAGGAGCTAGCCGAGACAGTGATAAGTCATGATTTTGGGACACGACAGCAATCTTATTATCACCATCAGGAGAATATTAATGAACAGTGGAAGAGGCGAATGCAAGCACAGAAGGAAGATTCTAAACGATCGGCGACACCTCAGCAAGATGAGCGACAGATTATCAGAATTTCGCAGCAACAAAAATATCATGTCGAGCCTGTGTCACCTCCAGAAGCGAATCATTGGCCCGAAGCAAATTACAGGAGGTACCAGCAACCACAGTCGCATATATCGGCGTTAGATTATGTTAAGAATCGTATTGTAGAAGTGATGCGTACCGAGGATGACAAAAAGGAGATTCAGGAGCATCCAGATAAGGAGAGAAATGACAGTCCCGGCGAGATGGTCATAGATGAGGAGAAACACGAAAACGATTTTCAGGGGCAGCAGCCGAGTGGGTTCGCATATCCGTATGTTACACATAAATCCGATAACACTGCCAATGAGAACAGAAACACAGAACCGAAACCACTCCTTTCCGCACAGTACGATCCTCTGTCGGACGAAGATTAA
Protein Sequence
METVHSVRIDHGPVQTNAMPYPQRQPPTHRPNHSQQSDLYKPSRSPLTNAARYPYPVSPQLQTSVAQVSSQRYNVPPTPSFPPAGYRDYRQPRISLLHPDYSNRARELQAGGPIMHHLDSMSNQGQQPFKKMRLQDQKDIQPLRIDTRESTGAYNPQVEAISPTLPDHMQEDQAFRSTKDELLQQIGKVDREIAKAEAQIGILKKKQQELEELALKPSTKQEQPEDTQPKHQSLAQKIYAENRKRAQNAHAKLDSLGTKLEFPMYNQPLDSSLYQENWRKHVGFKKRLLEYFKKRHVEKESRNSYLTETYSKLMQEWLRKVDKIESGVKRKAKEAKNRDFFEKVFPELRKQREDKERFNRVGARIKSEADLEEIMDNLQEQALEDKKMRSYAVIPPILLDTKERKITYRNNNGHIVDMEVEYKSRQFLNVWTPSEKELFKEKYLQHPKNFGVIASYLDRKSVADCVQYYYLSKKTENYKQLLRKSRQRTRSSRNNTQKVNSSASTSVVDILTTGVTTRLQREQQKTTVQQNRETPESIPTSTSTTCSAPIVSVSSAASTNGAIVGNPNSPLMVSSNSSPVSVTSSTVNSVAITTTSTTLSTAVNVPVSKSPRPIDNAVSGDNISDFNLFEDDASTRKGQDSVDANTMSDTSTQGMISIKKDIDLMEENNISDHVTSETKKKKERRKDKENVTIESSEDEPLDMQDKTLPGGQCLVCALQLGPQLQSRPLIPNHASLYGLREEQVPPNSRVCNICRCKSVRSRYTHCPLPNCPNSRGRIKRLRSFPQRLMELPSDVRDPILAEFHVPSGVSPVEEWPEEDINQLKNVLTEVGANWQLIGERLNKPPQQVRNFYTANRKRLNLEMCLGDRKPALTDEEESGSSTSSCEEPMQDNNSSDTASAGSPPTITEQIPQLPTKKEDYDSSATETADEGQTPDHYQSSATITVVNNDGQSRQNSSPLTVKDLMLNVIEFSLMKNAGSQQSQHPPTSGMAPTISSILNNDSNEVTIVSEYNLNNMQPPRGSRNEISITKLVTPLIAATITPVPPSGQITQSLSQSEHSNRDDLVVFQVQDNREPETLDLSIKKPRELPPPAHAKLQSQMHRSEAYIGYHQERKSPAVYVSTIPRVQPKLPSPKLANPKAGSITLGTPIISQPRYEGLLRQMTPEPKMGSITQGTPIHVPHMQDKRIYDYYNKRPPMPLNVPPQSANYQPQYRQPSYSVEQQLSSRQIIMNDYITSQQMLGRRNDKPQYYATTSPHRTPPPQQAQQRQGVIQRHTRPHYPPGHEALGSLVDVAVQQPSLPVPNSPHEGLGKTMADNLLEQPHRFQIIQHQQQLRQQQQRLEAERRAYHQQQQARHQQASRNDSSITAASLIDAIITHQINQAAEGGREVVSNSREPPRPGDRLFQSFHRDQPVAPQVDNNGERSPSVISVDLESESTTKNLTIKELAETVISHDFGTRQQSYYHHQENINEQWKRRMQAQKEDSKRSATPQQDERQIIRISQQQKYHVEPVSPPEANHWPEANYRRYQQPQSHISALDYVKNRIVEVMRTEDDKKEIQEHPDKERNDSPGEMVIDEEKHENDFQGQQPSGFAYPYVTHKSDNTANENRNTEPKPLLSAQYDPLSDED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-