Lyun017476.1
Basic Information
- Insect
- Lamprigera yunnana
- Gene Symbol
- bab2
- Assembly
- GCA_013368075.1
- Location
- JABVZV010002353.1:1722726-1761354[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.8e-12 2.6e-09 36.8 0.0 1 39 369 408 369 412 0.90 2 4 6.8e-13 6.3e-10 38.7 0.2 1 39 423 461 423 465 0.94 3 4 8.1e-18 7.5e-15 54.5 0.0 1 45 478 523 478 523 0.97 4 4 4.4e-16 4.1e-13 48.9 0.0 1 39 530 569 530 572 0.94
Sequence Information
- Coding Sequence
- ATGTCTGGACAACACTATTGTTTAAGGTGGAACAATTACCAAAGCAATATGACGTCGGTGTTCCACCAACTTCTTCAGAACGAAGCGTTCGTCGATGTAACTCTAGCTTGTAAGGATTTGTCACTTAAGGCTCACAAAGTGGTGCTTTCTGCGTGTTCTTCTTATTTTCAAAAGTTATTATTAGAAAATCCTTGCAAACATCCCACGATAATTATGCCACAAGATGTGTGTTACGCTGATCTAAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCTCAAGCAGAATTGCAGTCACTTTTAAAAACGGCAGatcagttaaaaataaaaggccTCTGCGAGTCTGACGAGAACGATATCTCTTCGTCTCCGCATTTTGCTCCAACGGTTTATCCAAAAATATCAAAGGTACATTCATCTATACACTACAGAAAATTAGATAGTAACAAGAGGCATAATATTCAAGAATTTGATCCAAATAATTTCTCAGATAGGGAAGAAGATCTTAAAGATACGTTATTAGAAGAACATATTTCTGATTATGATAGCGACGTACCGTTAGTTGTTGATGAAGGGccgaaaaggaaaaaattgacACACTCTCAACCCAAAACTGCTAACATGAGCAATCATGGCCTTTTGGCTGAGCAGTTGTGCGACAATGACGACGATTTTCCTCCAGAACCTCCTGCTCCTAGTGCAACTCCGGTCGGTCACGTCGACTTACAAGAACATTCGCCGACTCGCGCGTTATTGCAATCCTCTCATAGAACGGACTTATCAGATGTTCACGTAAAatacgaagaaataaaaaaagaaactatcgTTAAGTTTGAAACGTTGAGATCGTATGACCACGATTCCATGATGGATATGGACGCCAGTCATTTATCCGCTCCCGATCATTCTATGGATAGCCACGAAGATTCAAAAAGAGCAATACATTCTATGATGATTACGCCGGAATTAATGTCGATAATGCCCGGTGGTTCTGGGAGACTAGATACGTCGAACGGAGACAACGGACATCTTAAAAGCAACGGGCATTCGGACCTTTTAACTCCTAGGGGTCACGGGGGAGGACCAAAAACGTGGACGCAAGAAGATATGGATTTAGCTTTAGATGCCTTACGAAATCACAACATGAGTTTAACTAAAGCTTCCGCCACGTACGGAATTCCTTCTACCACTTTGTGGCAGAGAGCGCATAGATTAGGTATAGACACTCCCAAAAAGGAGGGACCCACTAAATCGTGGACAGAAGAAAGTTTAAATTCCGCCCTAGAAGCATTAAGAACGGGCACGATCTCCGCCAACAAAGCCAGTAAAGCTTATGGAATTCCTAGTAgcactttatataaaattgcgAGAAGGGAGGGTATAAAACTGGCGGCACCTTTCAATGCAGCGCCTACAACATGGTCACCGGAAGATTTAGAAAAAGCGCTAGAATCGATAAGGTCGGGTCAATCGTCAGTTCAAAAGGCTTCCACAGAATACGGTATACCAACAGGAACCTTATATGGTAGGTGTAAAAGAGAAGGGATAGAATTGTCTAGGTCAAATCCAACTCCATGGTCGGAGGATGCAATGGGTGAAGCTTTAGAAGCTGTAAGGTTGGGACATATGTCAATCAATCAAGCAGCAATTCATTTTAATCTCCCATATTCGTCATTGTATGGAAGGTTTAAAAGAGGAATCAAATATGATATTGAAACTATAGATTCAAATAATTCGGATAGTCAATCTCAACCAGATTCTCAAATACTTGTAATGGATTATCCAAATTCTCACCAACAAATTCAGTATCAACATCATACAAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESDENDISSSPHFAPTVYPKISKVHSSIHYRKLDSNKRHNIQEFDPNNFSDREEDLKDTLLEEHISDYDSDVPLVVDEGPKRKKLTHSQPKTANMSNHGLLAEQLCDNDDDFPPEPPAPSATPVGHVDLQEHSPTRALLQSSHRTDLSDVHVKYEEIKKETIVKFETLRSYDHDSMMDMDASHLSAPDHSMDSHEDSKRAIHSMMITPELMSIMPGGSGRLDTSNGDNGHLKSNGHSDLLTPRGHGGGPKTWTQEDMDLALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEESLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHFNLPYSSLYGRFKRGIKYDIETIDSNNSDSQSQPDSQILVMDYPNSHQQIQYQHHTNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_00854149;
- 80% Identity
- iTF_00854149;