Lhir017721.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- stc
- Assembly
- GCA_947359425.1
- Location
- OX375794.1:7062194-7066652[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 3e+04 -4.4 2.6 15 19 277 281 276 284 0.61 2 12 0.18 2.7e+03 -0.7 0.3 4 10 310 316 309 316 0.95 3 12 6.8e-06 0.1 13.4 13.0 4 18 325 339 323 340 0.93 4 12 7.4e-07 0.011 16.4 11.3 1 18 376 393 376 394 0.94 5 12 2.3e-07 0.0035 18.0 13.9 1 18 434 451 424 452 0.88 6 12 8.3e-07 0.012 16.3 13.4 4 19 499 514 492 514 0.87 7 12 1.2 1.8e+04 -3.4 2.0 5 10 543 548 543 548 0.93 8 12 0.045 6.7e+02 1.2 12.6 1 11 554 564 554 576 0.87 9 12 1.1e-08 0.00016 22.3 15.2 1 18 581 598 581 599 0.99 10 12 0.00064 9.6 7.1 12.0 1 19 638 655 638 655 0.89 11 12 4e-09 6e-05 23.7 14.8 1 19 691 710 691 710 0.97 12 12 0.013 2e+02 2.9 15.9 1 18 720 738 720 739 0.93
Sequence Information
- Coding Sequence
- ATGACGTATTGGGGCTCCTACGAAGATAAACTGCATGGTGGATATGATCAAAGATGTGATCCCGAATATGTGCAGCAATATTACAACAGTATGTCCTATTATAATCAGCAGAATCGATCCGCACACCATGGCCCAAACTCTAATTATTATGATGCTCAAAGAAATTATGTGGAGCAACCAGGCAGCAGTGGTAACCAGGTGACAGATAGAGCTTATGGCGAGGAAGCAGGGACCTCGTCGCAAAATTGCGGAACTGGCGCAGTGAAAAAGAAGCCTAATAATAATGGAAGATATTGGAACAATGGGCGGAAAAATGAGCGATATGGCAGTGGACGAACTGTCAGTAGGCCTCCTAATCCTAAACCGGAATTTGAACAGAATAGAACATATGGGGACGATGGGAGATATAGAAATAAGTTCAATAACCATCAGCCGAATAGATATAAGAACAACTATAACGATAGGAGAACTTATAATAACAGAAATAGAGACGGTTATGATAATAGAAGCGGCTATGATAATAGAGGTGGAGAGAAATATGGGAAACATTATGAAAATAGCGATTATGGAGCTACTGGAAGCGAACATAAAAATTGGAGAAATAATGCCAAAAGATGTAATCCGCCTACGCAAAAGAAACTGGATGCCGCTTCGCAGCGAGAACGTCTCGAACACATGCTTTCACGTAGAATGCTAGAGTGCCTAGTTTGCTGCGAAAAAATTAAACATACTGATAAAATCTGGTCGTGCGAACAATGCTATCATATTCTGCATTTGAAATGTACTATAGCTTGGGCAAATTCTTCAAAAGTAGCAAACGGTTGGCGCTGCCCCGCATGTCAATTTGTTTGCAGCGACATTCCAAAATTATATAATTGTTTTTGTGGGAAAACTCAAGAGCCACGTCCCGTTCCGGGGGTGGTGCCACATGCTTGTGGTGAATTATGCGAAAAAATACGTCGAAGTTGCGATCATAAGTGTACAATTTTATGTCATCCCGGCCCATGTCCCGATTGTGATATTATGGTTGCTAAACCATGTGGCTGTGGAACTACTCGCCAAACTGTCAAGTGTCGCTCAGATACAGAAATTGTTTGTGGAAATGTTTGTAGCAAGCAATTGGAGTGCACTGTGCATAAGTGTCAATTGCAATGCCATTCTGGCGATTGTTTGCCTTGTGAAAAAACTATCCGACAGGTGTGTTTCTGTGAGAAAGTTGGGAGAAAAATTCAATGTAGTGCAGAACTTGGAGGAGCTCCACATTATTCTTGTAATGATATATGTGGAAAACTATTAGCTTGTAAAAATCATCGATGTGAGAAATTATGTCATGGAGGAGAATGTGATCCTTGCATTAGAGATATCAACTTGATTACAGCATGTCCCTGTGGCCGATCACCATTATCATTAACTAGATTATCTTGTTTAGACCCCATACCTTGCTGTGATAAAATATGTGGTAAACAATTGAGTTGTGGCCAACCTGCAGCTCCTCATTTTTGTAAAGAGAGTTGCCATGAGGGTGATTGTCCACCATGCCCTTCTACTACGTTGGTTCGTTGTCGATGTGGACACCTTGGTAAAGAGATTCTCTGTTCTTCGGTAACAACGAAGGCTGATGATGCTCGCTGTGAAAAAAAATGTACCAAGAAGAGATTGTGTGGAAAGCACAGATGCAATCAGCGATGCTGCATTGAAGCGGAACATATTTGTCCATTGCCTTGTCAACATTTGTTAGCTTGCGGGCATCACAGATGTTCTAGAACTTGTCACAGTGGGCGTTGTCCTTCCTGCATCGAAACCAGCTTTGAAGAGCTCTACTGTGAGTGTGGCGCCAACGTACTTTATCCACCAATTCCGTGCGGTACTAAGCCACCAGCTTGTAATAATCCTTGCTCAAGACAGCGGCCATGTGGTCACGAAGTGAACCACATGTGTCACACAGGATCGTGTCCACCTTGCACAATTCTTTGTAAGCGTTGGTGTTATGGTAAACATGAACAACGTTCAGCCATTCCTTGCTATCAAGAAGACTTCAGTTGTGGACTTCCCTGCGGAAAAGCAATGCCTTGTGGATCGCACAAATGTGAAAAAGCATGTCATACAGGCCCATGTCCTTTGCCTTGTAAACAGAAATGTAATATTAGAAGACTTCAATGTGGTCATGCTTGTGGGGTGCCTTGTCATAAGCCTCCATGTCCAGAAACGTCATGTAAGCAAAATGTACCAATTTCTTGCGCTTGTGGTTTACAAAAAAGCACTAGGCCATGTATTGATTTGGCAGACGAGTATAGGGAATTGGAAATGGTTAATTTGAAAGATAAAATGTCTGACTTGTTCAAAGAACAAACTGTGGATATTAGCGATATTGTTAATAAGCCCAAGAGACCGCCTGTTTTAAAAATATTGGAATGTGTTGAAGATTGTCGCGTTCTTGAGCGGAATCGTCGTTTAGCTATCGGTCTACAAATTCGTAATCCGGATCTGAGTCAAAAGCTGACTCCTCGTTATTCGGATTTTATGCGAGGTTGGGCAAAGAAAGATTCCCAATTTTGTCAAAAAGTGCATGAGAAGTTGACGGAATTAGTTCAATTGGCTAAGCAGAGTAAGCAAAAAAGTCGAATGTTTTCTTTTGAATCGATGAATCGAGACAAGAGACATTTTGTGCATGAATATTGTGAGCATTTCGGTTGTGAGAGCACTGCTTACGATGTTGAGCCGAATAGAAATATTGTCGCCACTGCTTTTAAAGACAAATCATGGTTGCCGAGCTTAAGTCTTTTAGAATTTATCCAGCGTGAAAATGGTCAGCGAAAAGTACCTGGTCCAGTGTTGAGTAAAGGGTTGATGGGCAAATCAGAAACCGTGTCTTTGAAGCTGCCAGGAAGACCTCTAAGATCTAATACTCCTCCTTGTGAAACAGTTGATTATTTTGATAATCCCCCGGTATAA
- Protein Sequence
- MTYWGSYEDKLHGGYDQRCDPEYVQQYYNSMSYYNQQNRSAHHGPNSNYYDAQRNYVEQPGSSGNQVTDRAYGEEAGTSSQNCGTGAVKKKPNNNGRYWNNGRKNERYGSGRTVSRPPNPKPEFEQNRTYGDDGRYRNKFNNHQPNRYKNNYNDRRTYNNRNRDGYDNRSGYDNRGGEKYGKHYENSDYGATGSEHKNWRNNAKRCNPPTQKKLDAASQRERLEHMLSRRMLECLVCCEKIKHTDKIWSCEQCYHILHLKCTIAWANSSKVANGWRCPACQFVCSDIPKLYNCFCGKTQEPRPVPGVVPHACGELCEKIRRSCDHKCTILCHPGPCPDCDIMVAKPCGCGTTRQTVKCRSDTEIVCGNVCSKQLECTVHKCQLQCHSGDCLPCEKTIRQVCFCEKVGRKIQCSAELGGAPHYSCNDICGKLLACKNHRCEKLCHGGECDPCIRDINLITACPCGRSPLSLTRLSCLDPIPCCDKICGKQLSCGQPAAPHFCKESCHEGDCPPCPSTTLVRCRCGHLGKEILCSSVTTKADDARCEKKCTKKRLCGKHRCNQRCCIEAEHICPLPCQHLLACGHHRCSRTCHSGRCPSCIETSFEELYCECGANVLYPPIPCGTKPPACNNPCSRQRPCGHEVNHMCHTGSCPPCTILCKRWCYGKHEQRSAIPCYQEDFSCGLPCGKAMPCGSHKCEKACHTGPCPLPCKQKCNIRRLQCGHACGVPCHKPPCPETSCKQNVPISCACGLQKSTRPCIDLADEYRELEMVNLKDKMSDLFKEQTVDISDIVNKPKRPPVLKILECVEDCRVLERNRRLAIGLQIRNPDLSQKLTPRYSDFMRGWAKKDSQFCQKVHEKLTELVQLAKQSKQKSRMFSFESMNRDKRHFVHEYCEHFGCESTAYDVEPNRNIVATAFKDKSWLPSLSLLEFIQRENGQRKVPGPVLSKGLMGKSETVSLKLPGRPLRSNTPPCETVDYFDNPPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -