Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375803.1:13084067-13085584[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8 1.4e+02 3.9 1.4 1 23 93 115 93 115 0.96

2 12 0.079 4 8.8 4.2 1 23 126 149 126 149 0.97

3 12 0.00093 0.047 14.9 1.9 1 23 158 181 158 181 0.96

4 12 0.086 4.3 8.7 1.7 1 23 191 214 191 214 0.95

5 12 7.5 3.7e+02 2.6 5.8 1 23 223 246 223 246 0.94

6 12 0.00052 0.026 15.7 3.4 1 23 255 278 255 278 0.96

7 12 0.38 19 6.7 2.0 1 23 285 308 285 308 0.93

8 12 0.08 4 8.8 1.2 1 23 317 340 317 340 0.93

9 12 0.011 0.57 11.5 0.4 1 23 353 376 353 376 0.97

10 12 0.13 6.8 8.1 5.0 1 23 383 406 383 406 0.97

11 12 0.071 3.6 9.0 6.1 1 23 415 438 415 438 0.95

12 12 0.11 5.7 8.3 4.5 1 19 476 494 476 499 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8	1.4e+02	3.9	1.4	1	23	93	115	93	115	0.96
2	12	0.079	4	8.8	4.2	1	23	126	149	126	149	0.97
3	12	0.00093	0.047	14.9	1.9	1	23	158	181	158	181	0.96
4	12	0.086	4.3	8.7	1.7	1	23	191	214	191	214	0.95
5	12	7.5	3.7e+02	2.6	5.8	1	23	223	246	223	246	0.94
6	12	0.00052	0.026	15.7	3.4	1	23	255	278	255	278	0.96
7	12	0.38	19	6.7	2.0	1	23	285	308	285	308	0.93
8	12	0.08	4	8.8	1.2	1	23	317	340	317	340	0.93
9	12	0.011	0.57	11.5	0.4	1	23	353	376	353	376	0.97
10	12	0.13	6.8	8.1	5.0	1	23	383	406	383	406	0.97
11	12	0.071	3.6	9.0	6.1	1	23	415	438	415	438	0.95
12	12	0.11	5.7	8.3	4.5	1	19	476	494	476	499	0.90

Sequence Information

Coding Sequence: ATGCAAATTTTGGCCACTTGGGGTGCTGTGTACACTTTCAGTGACAGTAATATTTTAGTGCAAGTAGTTCCCGGTAGAGGTCTATCCAGTTTAGACAATTATTTTTCTATAGTTTTTATCTTGTATTTGATAATGGGCGATTTGAGGAAAAAGTTTTTCAATTGTAGTGATATTCTGCTTGAACGTCAATGCAAAATATGTAATTTTTCAACAAACGAGAAATTATTTTATTTTTTACATAAATGTGAAGTGCAGGGGAAAAGTGAGGTTATATATTATGAATGTGATCAATGTACTGTTGGAAGTTATTCTATTTTATGGTATTTTCATCATCAAAACACTCATTTACAGTGTGATATTAGATCATATAATCAATTTAAATGTGATCAATGTACTTTTTCGACGTTTAAACAAAGTTATTTAGGGCGTCATAAAAAAAGAATGCATTCATGTAGTGATACAAAGATGATGTTTACATGTGAAACGTGCAAATGGAAGACTAATTATGCTCATAATTTGAGAAATCATATAATTGTTAAACACAACAGTTTTTCTATAGAAAGAAAACTACATAAGTGTACTGAATGTGATTATCAGGCATTTGCAAAATCGACTGTGAATCGTCATATAAGAGCTAAACATACTCCAGATTATTTATTAAAATTACATAATTGTAATATTTGTTGTTTTAAAACAAAAGATCGTAATAGTCTATCGCGCCATATCTATATAAAACATACACCAGATGATAAAGTACTTTGGCACAAATGTGACATTTGTAGTTTTAAATCGAAAAACCGTTCTAATCTAAAAGCTCATTTACTGTCTAAACATTCGACTGGGAATACCAAACATAAATGCCAAAAATGCGATTATCAAGCATTTGTCAGAGGAAAGCTTCGGCAGCATATAATCTTGAAACATACGCCACATGATCAAATAAAATGGTACAATTGTAAATTATGCAGCTACCGATCGAAAATTGCTAAAGATTTGAAGAGACATACAGTGAGTATGCACACAATTGATGATAAAAAGAAAAATTCAATTGAAGAATATATATGTAGCAATTGTACGTACGAAGGGAAAAATCTATTCGATCTTAGAAATCATTTGAAAATCGTACATTTGATACGTCAAAAACGATTCGAATGCCATCTATGTCTATATACTACAGATATGGCATGGCATCTAAAACATCATATTAATTCAAAGCATTGCACTGATGAACAAGCAACTTGGTTTTTCTGCCAGGAATGCACGTTTAAGACGAAACGTTGTAGTAATTTAAAGATACATAAGCTTTCAAGACACTCAATTGATAATAAAGTTAAATGTGTAGAATGCTCATTTTCTGCTATCAGTTCAAAGATTTTGAAGCAACATGTTAATGATAAACATACGCCAGAAGATCAGGCCACATGGTACAATTGTAGCAATTGCACTTATAAATCAAAAAATCAAGGGAATCTTAGAGCGCATTGCAGTCGAAAACATTCTGCATTAGATAGAAAATAG
Protein Sequence: MQILATWGAVYTFSDSNILVQVVPGRGLSSLDNYFSIVFILYLIMGDLRKKFFNCSDILLERQCKICNFSTNEKLFYFLHKCEVQGKSEVIYYECDQCTVGSYSILWYFHHQNTHLQCDIRSYNQFKCDQCTFSTFKQSYLGRHKKRMHSCSDTKMMFTCETCKWKTNYAHNLRNHIIVKHNSFSIERKLHKCTECDYQAFAKSTVNRHIRAKHTPDYLLKLHNCNICCFKTKDRNSLSRHIYIKHTPDDKVLWHKCDICSFKSKNRSNLKAHLLSKHSTGNTKHKCQKCDYQAFVRGKLRQHIILKHTPHDQIKWYNCKLCSYRSKIAKDLKRHTVSMHTIDDKKKNSIEEYICSNCTYEGKNLFDLRNHLKIVHLIRQKRFECHLCLYTTDMAWHLKHHINSKHCTDEQATWFFCQECTFKTKRCSNLKIHKLSRHSIDNKVKCVECSFSAISSKILKQHVNDKHTPEDQATWYNCSNCTYKSKNQGNLRAHCSRKHSALDRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -