Lhir026754.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375797.1:27057139-27064240[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.27 14 7.1 0.2 1 23 98 121 98 121 0.97 2 30 2.2 1.1e+02 4.3 4.1 2 23 131 153 130 153 0.96 3 30 0.044 2.2 9.6 2.2 1 23 163 186 163 186 0.98 4 30 0.021 1.1 10.6 1.5 1 23 195 218 195 218 0.92 5 30 0.0081 0.41 11.9 3.1 1 23 259 282 259 282 0.97 6 30 4.5 2.3e+02 3.3 0.3 2 23 292 314 291 314 0.94 7 30 0.62 31 6.0 2.2 2 23 324 346 323 346 0.96 8 30 0.012 0.59 11.4 1.8 1 23 356 379 356 379 0.95 9 30 0.0066 0.33 12.2 1.0 1 23 388 411 388 411 0.93 10 30 0.44 22 6.5 3.7 1 23 420 443 420 443 0.96 11 30 2.6 1.3e+02 4.0 0.9 1 23 484 507 484 507 0.95 12 30 1.2 60 5.1 5.4 1 23 516 539 516 539 0.97 13 30 0.0056 0.28 12.4 1.5 1 23 549 572 549 572 0.97 14 30 0.043 2.2 9.6 2.5 1 23 581 604 581 604 0.93 15 30 0.013 0.63 11.3 1.9 1 23 613 636 613 636 0.97 16 30 0.14 6.8 8.1 1.1 1 23 677 700 677 700 0.96 17 30 2.1 1.1e+02 4.3 3.5 1 23 709 732 709 732 0.97 18 30 0.27 14 7.1 0.2 1 23 801 824 801 824 0.97 19 30 2.2 1.1e+02 4.3 4.1 2 23 834 856 833 856 0.96 20 30 0.033 1.7 10.0 4.2 1 23 866 889 866 889 0.97 21 30 0.001 0.051 14.8 1.5 1 23 898 921 898 921 0.93 22 30 1.8 91 4.5 1.5 1 23 930 953 930 953 0.93 23 30 0.14 6.9 8.1 3.5 1 23 962 985 962 985 0.97 24 30 8.2 4.1e+02 2.5 0.2 2 23 995 1017 994 1017 0.94 25 30 3.3 1.6e+02 3.7 3.1 2 23 1027 1049 1026 1049 0.94 26 30 0.0011 0.058 14.6 2.0 1 23 1059 1082 1059 1082 0.97 27 30 0.56 28 6.1 4.3 1 23 1091 1114 1091 1114 0.92 28 30 0.074 3.7 8.9 2.0 1 23 1123 1146 1123 1146 0.97 29 30 0.0021 0.11 13.8 5.1 1 23 1185 1208 1185 1208 0.98 30 30 0.0036 0.18 13.0 3.1 1 23 1217 1240 1217 1240 0.95
Sequence Information
- Coding Sequence
- ATGTCAGACTTTGTAAAACCTCGTTTATCACGGGCCCTTTTTGCCTGTCATAGGCCTCTGTCGTTTTATTTGTGTTGTTTTTGTGAATATAGAACACATCAAAAAATACATAACCTCAAACACAATTGTAGGCTGGATCGCCTTAGTAATGAGGCTACTTTGAACCGCACCGAAAGATGTAATGTTAATAAAAAGTCTTTAAAAGATTCAAGAAAAACCTACGAGGAATGTCAAAACTCTATTTTTTTGAAAAATATCAAAACAGATACAGATCAGCAACACCAACTATGCTACGAATGTGATCAGTGTGAGTTCAAAGCTGAAGAAAAGCGCCTATTGAATATACATATAAACAGCACCCATCCTCCAATTGAATTAGAAAAATCGTTAAAATGTGATCAGTGTCATTATAAAACAATTTATGAGGAATTCTTAAAAGATCATAAAAAGAGGAAGCATTTTTCAAAATCAAAAAGTATTCAAATGTATCAATGCGACTTGTGTGAGTATTTGACTGTATATAGAAGTAGTTTTACAAAACATAAAAGAGTAAAACATAGTCTAGGCGCCGTACAAAAAAGGTTTCATTGTGACCAGTGCGACTTTATTTACACCAACAAACAGGCCTTAAAAGTACATAACATCGTCAAACACACTTCATCCGAATTAAAGAAAAAGATTGAATGTAATATGTGTGACTATAAAACAGTGTATGGACGTTATTTACCAGTGCATAAAAAGAACAAGCATAATTTAATAGAAATACGGGAATGGTTTCAATGCGATCAGTGCAATTATAAAACGCCTAACAAAAATGAATTAAAAATGCATAAAAAAAGAAAGCATATTCCAATTGAATTACAAAATTGGTTACAGTGCAATCAGTGTGAGTTCAAAGCTGAAGAAAAGCGCGTTTTGAATATACATATAAACAGCACACATGCTCCAATTGAACTAGAAAAATCGCTAAAGTGTGATCAGTGTAATTATAAAACTATATATGAGGAGTTTTTGAAAGATCATAAAAAGAGGAAGCATTTTTTACATTCGAAACCATTAGAAATGTTTCAATGCGATCTGTGTGAGTTTACAACTGCCAATAAGAGTGGCTTTACAAGACATAAAAATCTAAAACACACTTTAGTTAAATTACAAAAAAGATTTCAATGCGACAAGTGCGATTTTATTACTATACACAAAAGTGCTCTAAAAGCACATAATATCGTTAAGCACACCTCTGTCGAATGTGCAAAACAATTCCAATGCGATAAATGCGAATATAAAACTATCTATGAACGTTACTTAACAGCCCATAAACATAAAATGCACAATTCAGAAGAAGTGCGAGAATGGTTTCAATGCGCCCATTGCAAATATAAAACTCTTCACAGAAAGGGTATAAATATGCATATAAAAAAAAAGCATCTTCAAATTGAATTACGACAGTCGTTCCAATGCGATCAATGTGAGTTCAAAGCTACTGAAAAACGTATTTTAAACAAACATATAAACAACACACATGCTCCAATTGAATTAGAAAAATCGTTCAAGTGTGATCAGTGTCATTATAAAACCATTTATGAGGAGTTTTTAAAAGATCATAAAAAGAGGAAGCATTTTTTAAATTCGAAACCCTTAGAAATGTTTCAATGCGATCTGTGTGAGTTTACAACTGCCAATAAAAGTGGTTTTACAAGACATAAAAATATAAAGCACACTTCAGTTAAACTACAAAAAAGATTTCAATGCGATAAGTGCGATTTTATTACTATACACAAGCATGCTCTAAAAGCGCATAATATCGTTAAGCACATTTCTGTCGAATGTGCAAAACAATTCCAATGCGATAAATGCGATTATAAAACTGTCTATGAACGTTACTTAACAGCCCATAAAAATAAAATGCACAATTCAGAAGAAGTGCGAGAATGGTTTCAATGCGCTCATTGCAAGTATAAAACTCTTCACAGAAAGGGTATAAATTTGCATATTGAAAAAAAACATCGTCCAATTGAAGTAAAACAGTGGTTCCAGTGCGATCAGTGTGAGTTTAAAGTTACAGACAAACGTATTTTAAACAAACATATAAACAACACACATGCTCCAATTGAATTAGAAAAATCGTTCAAGTGTGATCAATGCCAATATAAAACTATGTATGAAGAATTTTTGACAGATCATAAGAAAAGGAAGCATTTTTTAAATTCGAAAACAATTCAAAGATTTCAATGTGATCTGTGTGAGCTTGATAGCCTTGGGAATAAGGCTTTGAAGCACACCGAAGGTTGTAATGTTAATAAAAAGCCGTTAAAAGATCCAAAAAAAATCTACGAGGAGTGTCAAGAATCTACTTTTTTGAAAAATATCAAAACAGATACAGATCAGCAACACCAAATATGCTACGAATGTGATCAGTGTGAGTTCAAAGCTGAAGAGAAGCGCCTTTTGAACATACATATAAACAGCACACATCCTCCAATTGAATTAGAAAAATCGTTAAAATGTGATCAGTGTCATTATAAAACAATTTATGAGGAATTTTTAAAAGATCATAAAAAGAGGAAGCATTTTTCAAATTCAAAAAATATTCAAATACATCAATGCGATTTGTGTGAGTATTCGACTGTATTTAGAAGTAGTTTTACGAAACATAAAAGAGTAAAACATAGTCTAGGTGCAGTACAGAAAAGGTTTCAATGTGATCAGTGCGACTATATTTACACCAACAAACATGCCTTAAAAGTGCATAACATCGTTAAACACACTTCGGCCGAACTAAAGAAAAAATTTGAATGCAATATGTGTGACTATAAAACAGTGTATGAACGTTACCTACCTGTACATAAAAAGAAGAAGCATAATTTAAAAGAAATACGGGAATGGTTTCAATGCGATCAGTGCAAGTATAGAACGCCTAATAAAAAAGAAGTAAAAATGCATAAAAAAAGAAAGCATATTTCAATTGAATTACAAAATTGGTTACAGTGCGATCAGTGTGAGTTCAAAGCTATAGACAAACGTATTTTGAACATACATATAAACAGCACACATGCTCCACTTGAATTAGAAAAATCGCTAAAATGTGATCAGTGTCATTATAAAACTATATATGAGGAATTTTTGAAAGATCATAAAGAGAGGAAGCATTTTTTAAATGCGAAAACAATTCAAATGTTTCAATGCGAGTTGTGTGAGTATACAACGGCTAATAAAAGTAGTTTTACAAGACATAAAAATATAAAACACACTTTGGTTAACTTACAAAAAAAATTTCATTGCGACAAGTGCGATTTTATTACTATACACAAACATGCTCTAAAAGCACATAATATTGTTAAGCACACCCCAGCCGAATTTGCAAAACAATTCCAATGCGATAAATGCGAATATAAAACAGTCTATGAACGTTACTTAACAGTCCATAAAAATAAAATGCACAATTCAGAAGAAGTGCGAGATTGGTTTCAATGCGCTCATTGCAAGTATAAAACCCTTCACAGAAGCGGTATAAATATGCATATAAAAAGAAAGCATCTTCCAATTCAAGAGTGGTTCCAGTGCGATCAGTGCGATTTTAAAGCAAAAAACAAATCACATCTTAAAACTCATACAAATACAAAGCATCTATCGGTGGAAATGCAGATACTGTTTCAATGTGATGGTTGCAGCTATAAAACATTCTACAAATCTGATCTAAAAAGGCACCAAGATAGAAAGCATCTTAATTAA
- Protein Sequence
- MSDFVKPRLSRALFACHRPLSFYLCCFCEYRTHQKIHNLKHNCRLDRLSNEATLNRTERCNVNKKSLKDSRKTYEECQNSIFLKNIKTDTDQQHQLCYECDQCEFKAEEKRLLNIHINSTHPPIELEKSLKCDQCHYKTIYEEFLKDHKKRKHFSKSKSIQMYQCDLCEYLTVYRSSFTKHKRVKHSLGAVQKRFHCDQCDFIYTNKQALKVHNIVKHTSSELKKKIECNMCDYKTVYGRYLPVHKKNKHNLIEIREWFQCDQCNYKTPNKNELKMHKKRKHIPIELQNWLQCNQCEFKAEEKRVLNIHINSTHAPIELEKSLKCDQCNYKTIYEEFLKDHKKRKHFLHSKPLEMFQCDLCEFTTANKSGFTRHKNLKHTLVKLQKRFQCDKCDFITIHKSALKAHNIVKHTSVECAKQFQCDKCEYKTIYERYLTAHKHKMHNSEEVREWFQCAHCKYKTLHRKGINMHIKKKHLQIELRQSFQCDQCEFKATEKRILNKHINNTHAPIELEKSFKCDQCHYKTIYEEFLKDHKKRKHFLNSKPLEMFQCDLCEFTTANKSGFTRHKNIKHTSVKLQKRFQCDKCDFITIHKHALKAHNIVKHISVECAKQFQCDKCDYKTVYERYLTAHKNKMHNSEEVREWFQCAHCKYKTLHRKGINLHIEKKHRPIEVKQWFQCDQCEFKVTDKRILNKHINNTHAPIELEKSFKCDQCQYKTMYEEFLTDHKKRKHFLNSKTIQRFQCDLCELDSLGNKALKHTEGCNVNKKPLKDPKKIYEECQESTFLKNIKTDTDQQHQICYECDQCEFKAEEKRLLNIHINSTHPPIELEKSLKCDQCHYKTIYEEFLKDHKKRKHFSNSKNIQIHQCDLCEYSTVFRSSFTKHKRVKHSLGAVQKRFQCDQCDYIYTNKHALKVHNIVKHTSAELKKKFECNMCDYKTVYERYLPVHKKKKHNLKEIREWFQCDQCKYRTPNKKEVKMHKKRKHISIELQNWLQCDQCEFKAIDKRILNIHINSTHAPLELEKSLKCDQCHYKTIYEEFLKDHKERKHFLNAKTIQMFQCELCEYTTANKSSFTRHKNIKHTLVNLQKKFHCDKCDFITIHKHALKAHNIVKHTPAEFAKQFQCDKCEYKTVYERYLTVHKNKMHNSEEVRDWFQCAHCKYKTLHRSGINMHIKRKHLPIQEWFQCDQCDFKAKNKSHLKTHTNTKHLSVEMQILFQCDGCSYKTFYKSDLKRHQDRKHLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -