Lhir008702.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375801.1:3647852-3649813[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0048 0.24 12.6 3.7 1 23 113 136 113 136 0.94 2 16 4.5 2.2e+02 3.3 3.2 1 23 145 168 145 168 0.96 3 16 0.021 1.1 10.6 1.5 1 23 173 196 173 196 0.98 4 16 0.0042 0.21 12.8 0.9 1 21 236 256 236 260 0.91 5 16 4.7 2.3e+02 3.2 4.7 1 23 269 292 269 292 0.96 6 16 0.0037 0.19 13.0 1.4 1 23 301 324 301 324 0.96 7 16 0.49 25 6.3 1.0 1 23 333 356 333 356 0.93 8 16 0.16 7.8 7.9 1.5 1 23 365 388 365 388 0.93 9 16 0.12 5.8 8.3 1.2 1 23 397 420 397 420 0.93 10 16 0.2 10 7.5 6.0 1 23 429 452 429 452 0.93 11 16 0.069 3.5 9.0 1.5 1 23 461 484 461 484 0.94 12 16 0.0055 0.28 12.4 3.7 1 23 493 516 493 516 0.92 13 16 0.037 1.9 9.8 2.2 1 23 525 548 525 548 0.98 14 16 0.015 0.73 11.1 2.3 1 23 557 580 557 580 0.92 15 16 0.075 3.8 8.9 3.7 1 23 589 612 589 612 0.93 16 16 0.25 13 7.2 1.4 1 23 621 644 621 644 0.92
Sequence Information
- Coding Sequence
- ATGTCGGTTTTCTCGAAGTGCTGCCGCTCTTCCTCGGCTTTTTCCTGTTACGATTCACTGGAATCTTATAGATGCCGTTTATGCAACTTTGAAACAAATGAAAAAAGTGTTTATTTTATTCACCATTGTGAGATTTTAGATGTTTTGGATGAAGCCTCTTTCGAAAAATGTCCACGTTGCAGAGTGGGTAGCTTTTCGTATGTGTGGAGATACTTTCACAAAAGAAAGTGTAATTTTATAGAGCATAAATCATCTATTACAACTAATACGGAAAATGGAAACAGTATTGTTACAACGACTAGCCAAGCAGATAAACCTTACCAATTCGCTACTTGTTTTGAATGTGATCAATGCAAGTATACAAGTAAATACAAATTCCAGTTAAAAAGACATATTTATCTGAAACATAAGCCCAATGAAATTAAGGAATGGTTTAAATGTGATCGATGTTTGTTTAAAATTATTTATAAACCATATTTTACAAAGCATCAAAAATTAAAACATTCTCCATTAACATTTCAATGTGAATTATGTGGGTTTAAAACTATGTTTCAAAGGGTTTTACAAAAACATATAAACAGAACGCATTCTTTACCAAAATTGCAAAAAATTGCAAAGGAAATGCTTGGTAATTTTAAAATGACCGAAAAAATTGCGCGTTTAAAAAAACATAAAATTAATCTTCCAAGAAAATTACAGAAAAAATACAAATGCGGTGAATGCGAATATTCAACTTTTTATAAAAGAGATCTAAACAAACATATTATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCCAATGTGATAAGTGTGAATACACAACTCTTTGTAAATCAAATCTGGAAACACATAAGAATACAAAGCATCTTTCAAGGGAATTACAACCAAAATTCCAATGCGAGCAGTGTGAATATACAACTTTTTATAAAGGAAGCCTGAAGACACATATAAATGCGAAACATCTCTCAAGCAAATTACGAACGAAATTCCAATGCGATCAGTGTGAATTTAAAACTCTTAGAAAAGACGTTTTAAAAAATCATATAAATGCAAAGCATCTTTCAAAAGAATTACAACAAAAATTCCAATGCGAGCAGTGTAAATATAAAGCCCTTACAAATGAGCATTTGGAAAATCATATAAATGCAAAGCATCTTTCAAAAGAATTACAACGAATATTCCAATGCGATCAGTGTGAATTTAAAACTCTTAGAAAAGAGCTTTTGAAAAATCATATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCGAATGCGATCAGTGTGAATATAAAACGTTTTATAAACATCATCTAAACAGACATGAAAATGAAAAGCATCTTTCAAAAGAATTACAACGAATATTTCAATGCGATCAGTGTGAATATAAAACTTTTAGAATAGAGTATTTGAAAAATCATGTAAATGAAAAGCATCTTTCAGAAGATTTGCAACAAAAATTCCAATGCGATCAGTGTGAATATAAAACTTTTCATAGAAGTAATCTAAACAGACATGAAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCCAATGTGATCAGTGTGAATACACAACTCTTGGTAAATCAAATCTGAAAACACATAAGAATACAAAGCATCTCTCAAGTCAATTACAACAAAAATTCCAATGCGAGCAGTGTGAATATAAAACTTTTTATAAAAATAATCTAAACAGACATGAAAATGCAAAACATCTTTCAAGCAAATTACAACTAAAATTTCAATGCTATCAGTGTGATTATTTATCTTTTCATAAACAGGACCTAAAAAGACATATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCCAATGCGAGCAGTGTGAATATAAAACTTTATATCAAGAAACCTTGAAGAAACATATAACTGCAAAACATCTTTCAAGCAAATTACAACAAAAATTCTAA
- Protein Sequence
- MSVFSKCCRSSSAFSCYDSLESYRCRLCNFETNEKSVYFIHHCEILDVLDEASFEKCPRCRVGSFSYVWRYFHKRKCNFIEHKSSITTNTENGNSIVTTTSQADKPYQFATCFECDQCKYTSKYKFQLKRHIYLKHKPNEIKEWFKCDRCLFKIIYKPYFTKHQKLKHSPLTFQCELCGFKTMFQRVLQKHINRTHSLPKLQKIAKEMLGNFKMTEKIARLKKHKINLPRKLQKKYKCGECEYSTFYKRDLNKHIINAKHLSKDLQQKFQCDKCEYTTLCKSNLETHKNTKHLSRELQPKFQCEQCEYTTFYKGSLKTHINAKHLSSKLRTKFQCDQCEFKTLRKDVLKNHINAKHLSKELQQKFQCEQCKYKALTNEHLENHINAKHLSKELQRIFQCDQCEFKTLRKELLKNHINAKHLSKDLQQKFECDQCEYKTFYKHHLNRHENEKHLSKELQRIFQCDQCEYKTFRIEYLKNHVNEKHLSEDLQQKFQCDQCEYKTFHRSNLNRHENAKHLSKDLQQKFQCDQCEYTTLGKSNLKTHKNTKHLSSQLQQKFQCEQCEYKTFYKNNLNRHENAKHLSSKLQLKFQCYQCDYLSFHKQDLKRHINAKHLSKDLQQKFQCEQCEYKTLYQETLKKHITAKHLSSKLQQKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -