Lhir011829.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375804.1:16240992-16242374[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.64 11.3 2.4 2 23 92 114 91 114 0.96 2 12 0.00078 0.039 15.1 0.9 1 23 123 146 123 146 0.97 3 12 2.5 1.3e+02 4.1 0.1 5 21 148 164 148 165 0.91 4 12 2 1e+02 4.4 0.7 1 23 171 194 171 194 0.93 5 12 0.0067 0.33 12.2 4.4 1 23 203 226 203 226 0.96 6 12 7.7e-05 0.0039 18.3 1.9 1 23 235 258 235 258 0.98 7 12 0.81 41 5.6 6.5 1 23 267 290 267 290 0.98 8 12 0.008 0.4 11.9 5.8 1 23 299 322 299 322 0.97 9 12 0.03 1.5 10.1 3.7 1 23 331 354 331 354 0.97 10 12 0.31 15 7.0 4.6 2 23 364 386 363 386 0.94 11 12 0.043 2.1 9.7 2.6 2 23 396 418 395 418 0.94 12 12 0.011 0.57 11.5 6.5 1 23 427 450 427 450 0.98
Sequence Information
- Coding Sequence
- ATGTGTAGTTATTTGAAGAAGTTTGTGTGTTACTCTTCTCTCCCAGCTTATAAATGTGAATTTTGCAATTTTACTACAGATGAGAAAGTTCACTCATTTAATCATAAATGTGGATTTAGAGGTTATGATAATTTAAGGTCAGTTTATAGACGATGCAGACAGTGCAAAGTTGGTAGTTACTCGTCGGTTTGGCGTTATCGTCATAAAAAGAAATGTCAAACTAATCAATATTTGTTAGCAGCTAAATTAAATAATTTATTGAAAAAATGTATTGAATGTGATCAATGCGACTTTAAGACCAACAGAAGTAGATACTTAAAAATTCATAAAAAAAGAAAACATGTTTTTTTTAAATCGAAACAATGGTTTCAATGTGATAACTGTGATTACAGAACTGAATCTGAGAATAATTTGATAACACATTATAAAGTATATCATATTGAATGTGAGTATAAAACCAAATTTAAAGGTAATCTAAACGAGCACACTTCAACTGAATTTGAAACAATTTTCAGTTGCAATGCGTGTGACTATAAAACTCTTGTAAGACGCAGCTTGGTCCAACATTTGAAAAGAATTCATATTCCACTTGAATTGCAAACCATTTTTAATTGCAATGAGTGTGAGTATAAAGCTAAGAATAAATTCCATCTGACGAGGCATAAGAACATAAGACATATTCCAATCGAAATGCAAACCACGTTTAAGTGTGGTGAATGTGGGTATATAACTAGATATAAACAATCTCTAACTAAGCATCTGAAAATGAAACATACTCCTATTGAACTGCAAACAATTTTTAAATGCAATGAGTGTGAATATGAAACTAACTGTAAACGTTATTTAACAAAGCATGTGAGAGTGTGCCACACTCCAATTGAATTGCAAACTTTTTTCAAATGCACTGAGTGTGAGTACAAAACTAAATTGAAACATTCTCTAACAAAGCATCGGAAAGTAAAACATACTCCAATCGATTTGCAATCATTTTTCAATTGCAATGAGTGTGAGTTTAGAACAAGGTATAATTTTGATCTAAGAATGCATAAGAAAACAAAACATATTCCAGTTGATTTGCAAACATTTTTGTATTGCAATGACTGTGAATATAAAACTCGGTTTTTGGGTTGTCTAAAAAAACATAAGAAGTTAAAACATATTCCAATCGAATTGCAACCAATTTTACATTGCAACGAATGTGAGTATAAAACTATCTTTAGAAGTTACCTTAGGACCCATTTAGCAAGGAAACATGCTTCAATTAAATTGGACAATCTTTTTAAATGTAATGAGTGTGAATATAAAACTCACTTTAAAGGTAATTTAACAAAGCATAGAAAGAAAAAACATTTTCAAATTGAGCTGCAAAATGTCTTATTGTGA
- Protein Sequence
- MCSYLKKFVCYSSLPAYKCEFCNFTTDEKVHSFNHKCGFRGYDNLRSVYRRCRQCKVGSYSSVWRYRHKKKCQTNQYLLAAKLNNLLKKCIECDQCDFKTNRSRYLKIHKKRKHVFFKSKQWFQCDNCDYRTESENNLITHYKVYHIECEYKTKFKGNLNEHTSTEFETIFSCNACDYKTLVRRSLVQHLKRIHIPLELQTIFNCNECEYKAKNKFHLTRHKNIRHIPIEMQTTFKCGECGYITRYKQSLTKHLKMKHTPIELQTIFKCNECEYETNCKRYLTKHVRVCHTPIELQTFFKCTECEYKTKLKHSLTKHRKVKHTPIDLQSFFNCNECEFRTRYNFDLRMHKKTKHIPVDLQTFLYCNDCEYKTRFLGCLKKHKKLKHIPIELQPILHCNECEYKTIFRSYLRTHLARKHASIKLDNLFKCNECEYKTHFKGNLTKHRKKKHFQIELQNVLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -