Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375801.1:23688827-23690575[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8 4e+02 2.5 0.6 1 20 145 164 145 164 0.85

2 11 0.17 8.4 7.8 0.8 2 23 205 227 204 227 0.95

3 11 0.025 1.3 10.4 3.9 1 23 236 259 236 259 0.96

4 11 0.016 0.81 11.0 3.6 1 23 268 291 268 291 0.96

5 11 2.1e-05 0.0011 20.0 0.8 2 23 360 382 359 382 0.97

6 11 0.001 0.051 14.8 4.5 1 23 390 413 390 413 0.98

7 11 0.0042 0.21 12.8 4.2 1 23 422 445 422 445 0.97

8 11 0.019 0.98 10.7 3.6 2 23 455 477 454 477 0.95

9 11 0.53 27 6.2 5.3 1 23 486 509 486 509 0.98

10 11 0.00069 0.034 15.3 1.0 2 23 519 541 518 541 0.96

11 11 9.3e-05 0.0047 18.0 3.8 1 23 551 574 551 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8	4e+02	2.5	0.6	1	20	145	164	145	164	0.85
2	11	0.17	8.4	7.8	0.8	2	23	205	227	204	227	0.95
3	11	0.025	1.3	10.4	3.9	1	23	236	259	236	259	0.96
4	11	0.016	0.81	11.0	3.6	1	23	268	291	268	291	0.96
5	11	2.1e-05	0.0011	20.0	0.8	2	23	360	382	359	382	0.97
6	11	0.001	0.051	14.8	4.5	1	23	390	413	390	413	0.98
7	11	0.0042	0.21	12.8	4.2	1	23	422	445	422	445	0.97
8	11	0.019	0.98	10.7	3.6	2	23	455	477	454	477	0.95
9	11	0.53	27	6.2	5.3	1	23	486	509	486	509	0.98
10	11	0.00069	0.034	15.3	1.0	2	23	519	541	518	541	0.96
11	11	9.3e-05	0.0047	18.0	3.8	1	23	551	574	551	574	0.97

Sequence Information

Coding Sequence: ATGTCGGCTCTTTCTAAATGTAGTCGGCCTTTTATGATTTTCGCTTGCCATGATTCAGTGGAGTCTTATTGTTGCGCTTTTTGCAACTATAAGTCTAATGAAAAAATTGGCTTAAATAATCACAATTGCGGTTTTTACGACGTTTTGGATAAGGCTCGTTTTAAGGTTAGGCGGTGTCATCGTTGTAAAGTGGGAAGTTTTTCTCTTGGATGGCGCTACTTTCACAGACAAAGATGCAATTTTGATAAAGATTCAGCAGTAGAAGTTGATAAGAAAGATGTAAACCGTTTAATTACAAATCTTGAAAAAAAAGCTGAAACTAATAAATTTTCGACTACGTTTGAATGTGATCAACGTACGCATTCAAACAAATACGCTGCTTATATAAAAAATCAGGTAAATTTGAAAGATCCACCAAGTTTGGAAGCGTGGTTTAAATGTGATCAGTGTGAGTTTAAAACTTTACGTGGAAGTTTGTTAAAACAACACCTTCCATGTAGATTAAAACGAACATTTCAATGCGATCAATGTGAATTCACTACTCTTTACAAATATAGCATGAAACTACACAAAACTAGAAAACATCTTTCTATTGAATTACAACAAAAAATTTATTGTGACCAGTGCGACTTTATAGCGAACTCTAGAGTGAGTTTAAAAAGTCACAAAAACAGAAAGCATTCTTCAAGTGAATCGAAAGAAATATTTCAATGCAGTCTGTGTGAATACACATCTATTCATAAACAAGATTTTAAACAACATCAAAAAGCAAAGCATCTTTCTATAGAAACACGAGAAAAGTTTCAATGCAATCAATGTGAATTTGCAACTATTCATAAAAGTTATTTGGAAAATCATAAAAGTAGAAAGCATTTTAGCAAACTACAGCAGACATTGCAGTGTGATAATGACTTCAAATATGCAACTATAGATTGTTTAAATAAGCACGTATCTAACACACTTGAATTACAAAAAAAAAATCACTGCGATCAGTGTGAGTACAAAACTGCTCATAAAAACTGTCTAATAAATCACAAGAATAGACATCATTCCTCAAGTGAATTACACGTAGAATTACAATGTGAGCAGTGCAATTATGTAACAATCCGTAAAGGTGATTTGCAAAATCATATGAGAAGAAAGCATCTAAATACACAACAAAAGAGATTTCAATGCGATCAGTGCACTTACACAAGCAAATATAAACATGGCTTAAAAAATCACATTAGGAGAATGCATTATTCAAGTGAATTGCAACAAAAATTTCAATGCAATCAGTGTGAATATAAAACAATCCACAAAGATTACCTTAGAAATCATCTATCTAAACAGCATTTTCCAAGAGAATTGCAAAAAAAAATTCACTGTGATCTGTGCCCATATGTAACTACTCACAAAAAGTACTTGAGAATTCATACAAATAGTAAGCACCTTCCAAGAGAATTACAACGAAGATTTCAATGTGATCAGTGCGATTACACAACACTTTATAAACACGAGGTGAAAAGGCATAAAAAAACAAAACATCTTCCGAGCGAATTGCAACAAAAGCTTCAATGCGATCAGTGCGAGTATACAACCATCAATAAACGTCTTTTGAAAAGACATCTCAATGTAAAACATCTTTCTATTGAGGTACAACTACTAAAACACGAATGCAATCAGTGCAGCTATATCACTACTAATAAAAGCAATTTAAGGCGACATCAAGAAACCAAACATTTTTCAAGTAATCTACAGCAGTTTTAA
Protein Sequence: MSALSKCSRPFMIFACHDSVESYCCAFCNYKSNEKIGLNNHNCGFYDVLDKARFKVRRCHRCKVGSFSLGWRYFHRQRCNFDKDSAVEVDKKDVNRLITNLEKKAETNKFSTTFECDQRTHSNKYAAYIKNQVNLKDPPSLEAWFKCDQCEFKTLRGSLLKQHLPCRLKRTFQCDQCEFTTLYKYSMKLHKTRKHLSIELQQKIYCDQCDFIANSRVSLKSHKNRKHSSSESKEIFQCSLCEYTSIHKQDFKQHQKAKHLSIETREKFQCNQCEFATIHKSYLENHKSRKHFSKLQQTLQCDNDFKYATIDCLNKHVSNTLELQKKNHCDQCEYKTAHKNCLINHKNRHHSSSELHVELQCEQCNYVTIRKGDLQNHMRRKHLNTQQKRFQCDQCTYTSKYKHGLKNHIRRMHYSSELQQKFQCNQCEYKTIHKDYLRNHLSKQHFPRELQKKIHCDLCPYVTTHKKYLRIHTNSKHLPRELQRRFQCDQCDYTTLYKHEVKRHKKTKHLPSELQQKLQCDQCEYTTINKRLLKRHLNVKHLSIEVQLLKHECNQCSYITTNKSNLRRHQETKHFSSNLQQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -