Lhir027457.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375802.1:1607419-1614122[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00094 0.047 14.9 0.2 1 23 342 365 342 365 0.97 2 14 0.3 15 7.0 0.4 1 23 403 425 403 425 0.97 3 14 0.0012 0.059 14.6 4.6 1 23 490 513 490 513 0.96 4 14 0.035 1.8 9.9 2.1 2 23 520 542 519 542 0.95 5 14 0.0053 0.27 12.5 4.4 1 21 645 665 645 666 0.95 6 14 0.039 2 9.8 0.9 2 23 678 700 677 700 0.91 7 14 0.23 11 7.4 0.7 1 23 703 726 703 726 0.95 8 14 0.44 22 6.5 0.2 2 23 732 753 731 753 0.96 9 14 0.21 10 7.5 0.4 2 23 787 809 786 809 0.95 10 14 0.088 4.4 8.7 0.5 2 23 818 840 817 840 0.94 11 14 0.1 5.1 8.5 0.0 3 23 847 868 846 868 0.95 12 14 8.5 4.3e+02 2.4 4.9 3 23 1012 1033 1011 1033 0.95 13 14 0.21 11 7.5 0.4 2 23 1040 1062 1039 1062 0.94 14 14 0.47 23 6.4 0.9 1 23 1075 1097 1075 1097 0.96
Sequence Information
- Coding Sequence
- ATGGAAACAAAACTGTGCCGGATCTGCGGAAAACTCGGCCAGAATTATATCAACATCTTTAGGACGGAAGGCCTAAAATATAAAATCGAGACATGCCTTCCGATTATTGTGTCTCCCCACTCCTTGTTGCCGGATACGATTTGTGGCGGGTGTTCGGATAATGTGAATAATTTTTATAATTTTATTAAAAATTGTTTACAAAATATCATTATTTTGGAGGCCCAGTACGATATCAACGAGTCTTGTCTGAAAGCCAAGAGAAAAAATGAAAAAGGTTCGAACACCGATTTTGCATTTCAGCAGCATGCCAGCAGCACACAAACCGATGATTATCTAGATCTACTACTCAAAGAACATGAACAATTCCAATTTACGTTTTGCAAATTTAATAGTCGAAAACTTGTTGATTACGATATCGAATCGGATACAGATTCTAATGAAACCCTGTCTTCGTCTCTGTTTCCTCAATTGAAGGCTACATCATCATTATTCGATCAGTTTGGACGGAATTATTTTGACGATACTGAAAATTATCTAATTAATGAGATTGTTCAAAGAAAAAAGCGCAAATGTGAAGATACGATCGAATACACTCCATCCAAAATATTTAAAATGGATAATTCAAGTAGAAGAAAAAGTAAACAACCGAAGAAATTAGAACCTAAAACACCGGCCCAATCAGCTGCGGCAACTATACAAATACCAATTGTTGAGAATGGAACAGCCGATATTAATCAGTTGTATAAAGATGTGGTTGCTTCGTTTCCGCAACTTTGTCTTTTATGTGGTGATGAAAAATTTGATGGACCGTCCACTTTGGCTAGTCATGTGTTTGAATGTCATGGAATTGATATGGCACAACAATTTGTTGCTCTTAATATGGCAGATTCTGCCGCACTCGATAAGAGAAAGAAGTTACCTAATTTAGTTAAGATATCTGATCTCAGGAAAAGCGATTCTATAGATGACAATCACCCACAAAATGAGCAACTTTGTGAGGAGCCTCTAACACTTCTTCCAAGCTTCGTTTGTTCCTTATGCCCTGCAATATTTACAGCTCGTTCTGAACTCTTCACACATCTTCGCGTAAAGCATCCCGAACAGTCATCTCTTCTATGTGGAATGTGTTTACACCAAGCCTCAACATTACAAAATCTTCAAAATCACATCGAATTGTGTAGTCAGCAGCATCCTACCACCACAAAATACGTATGTCAAGTTTGTCATTATGGCGATGATAATTCCAAGACTTTAGAAAATCATATTTTAGTACATGATTTTCTTTTAGAAGTTTGTAGGAAACAATCAAAAATGTTTGACCCGGCTGATTATCTTGAAACAAACGGAAATTATGAATCTGGTGGCTCGTCACCAACTGGAAAAAGTCTGTCCTGCAGTGAATGTGGTTTGGATGATTTTGAAACATTTAAGGACTTTAGTACGCATAGAAGAAGTCAACATTCGATCTTCCATTGTGATTTATGTAATAAGTTTTATGGTAGGAATTCACATTTGTGGAAACATGTTAATAGGTTACATAAAGGGAATCCAAGTATCACCTGTCAGTTGTGCTACAAGACAAGTGCTTCAAAATATCATTTAGCTCAACATTTCAATAAAATACATAGCGCAAAAACTTACAAACAAAAAACAGAACCTTTATCAACGCTTTCGGATAATGAATTTATGGCACAAAAGTTTCAAGCTTTTGATTTTCAATCAGTCAAACAAAGTTTTATGAGACAAGAGTTAATAGATCAAGAGAAAAAAATAGTTCATTTAGAAGTTGATGATAATTCAAGTAATCGATTATCGGATCATGAAGAAAATATAAGGCAAGAACCTGTTTCCGCACCAAAGGAGATTGATTCATCCAGTGATCTTTACACGAATATTATTACAAATTATACACCACCAGCGAATGAAGGTGAATTTAAATGTCCTAAATGTAGCAAAGGTTTTCATAAAAAAACATTACTTAAAAAACATAAAAAGAACTGTCGCCCACGTTTACAGAAAGATTTGCTTACACGGTGTAAATCATGCGCGCGTATCTTCAAAGATCGTCAGAGCTTGGCTAAACATCTTGTTAATTACCATTCTGAATACGCATGTGAGATTTGCGGCCAGAAAGTACAAAGTAAATGTGAAATTGTCTCTCACATACGTTTTTCGCATCCTGGCTGTCATCTTGTGTGTACAATTTGTCGGAATATTTTACGAAGTCGCAATGACCTAGTCGAACATACTCGTGATCATATGAACTCTTATATTTGTCAGTTTTGTGCCGATGCCTTGCCAAGCAAAATCAAGCTTAAAATGCATATTTTAAGTTTACACAGGAAGATTTTAAGTTTGAGTTGCGGGGTGTGTCTGAAACTGTTTGAAACACAACATGTTTTACGGGATCACGTTAGATTAGTTCACAAAGATCAGTTGGCACCACTTACTTCATGTCCAGTATGTGGAAAAAATTATGGTTCAAAATGGAAAACCTATGATCACTTGAATAAATCGCATGGGAGAATTTTCAAAGCTTGTAAAGCATGCTTAGAGGTTTTTGATACAGAGGGTCAGCTTCAAGCGCATTATGACACTGCGCATGCTAATTCGTTCCAAAATAAAAATTGTGTTATACCAGTTAGTGCACCACCGATTCAACAAAATAATAACTGTGAAAGTGATTCAGATAGAGATTCTAGCGAGCAAAGCGATACAGAAAATGAAAGAGAAGATGGTACAGAGGAAGAACAAAAACCTGATTATTTCTTAGATGTTACTGATTCAAAAATTTCTTTATTAGAAAAAAGACTGTTAGGACAAAAAATTAAAGAAGAAGATAAATGCAGTAAAATCACAAGTCCATCAATCTTGCCGCCACCACCACTGTTGAAAAATAACACTAAAAAGAGAGAAGAAAAGTCACTCACAAAAAAAGATGAATCAGAACTGAATGAAATTAATTACTCGTCTAATCCTCAACACAATAGTTCTAAGCGTACAGTATATGTTAATAGTAATGATCCTTCTTTTTGTGAAATTTGTCATAAAACATGGCCAGCGAAAAAACATCTCTGGCAACATTATATTCGGTGCCATAAAAGTGTCGCGGCAACTGTCTGTGGCATTTGCTTAAAGACGAACAAATCTTATAGCTCTTTACAAGAACATTTACGCGCAAATCATCCGACCTTGCTACATGGGCAAGGTTTTGGATCGAATTTTATTTGTCGAATTTGTGGCCGTTACCACAATGCCAGTAGTAAGTTGAAATTACATATGGCTATTCATGAGAATTTTGATTGGTCATTGTTAGATGGTCCCCAGAAAGAGACGAAAAAAGAAGAAAATGGTTACCAAGAAAATAGTAATAATGAGATAAATTATGATAGTTTAATTGAGCAAGTGGAGTGTTCCTCGGGAAGCGATTCTGATACGGAAACGGTTGTCGAAGCAAAAGTTCCGGCAGCGGTGGAATCAAGCTCAGATGATGAAGATGACGATGATGATGAGGATGATGGAGAGGAAGAAGATGGAGAAAGTGAGTCTGGAGCGTCGGAGAATTCTCTTGAAGCACAAATGCTAGATAATATGTTACGAGAAAAAGAGATTTCGGATAATGGGAATATGCATTATGGAAGTTCAGTATCGGATGATTCTAGTGGTGCTAGTTGTTTTTCGGCAAAAAGTGATGATAGTTCAGATGATAATGAATCAAATTCTTCAAATCTGGAAGGGAATATGTTTCGTTGTAGACCTGAAGAACTAGATTCAGCCATTCAATCAATTAAATTCGAATGCGTTGATAAAATTGAAATACAGATGGATAACGATTATAAGTTTGATCTACAAACTCAAACTCTAAATGATAATGAAATTGATGCTGCTGTCGGGAGTATTCTCTGA
- Protein Sequence
- METKLCRICGKLGQNYINIFRTEGLKYKIETCLPIIVSPHSLLPDTICGGCSDNVNNFYNFIKNCLQNIIILEAQYDINESCLKAKRKNEKGSNTDFAFQQHASSTQTDDYLDLLLKEHEQFQFTFCKFNSRKLVDYDIESDTDSNETLSSSLFPQLKATSSLFDQFGRNYFDDTENYLINEIVQRKKRKCEDTIEYTPSKIFKMDNSSRRKSKQPKKLEPKTPAQSAAATIQIPIVENGTADINQLYKDVVASFPQLCLLCGDEKFDGPSTLASHVFECHGIDMAQQFVALNMADSAALDKRKKLPNLVKISDLRKSDSIDDNHPQNEQLCEEPLTLLPSFVCSLCPAIFTARSELFTHLRVKHPEQSSLLCGMCLHQASTLQNLQNHIELCSQQHPTTTKYVCQVCHYGDDNSKTLENHILVHDFLLEVCRKQSKMFDPADYLETNGNYESGGSSPTGKSLSCSECGLDDFETFKDFSTHRRSQHSIFHCDLCNKFYGRNSHLWKHVNRLHKGNPSITCQLCYKTSASKYHLAQHFNKIHSAKTYKQKTEPLSTLSDNEFMAQKFQAFDFQSVKQSFMRQELIDQEKKIVHLEVDDNSSNRLSDHEENIRQEPVSAPKEIDSSSDLYTNIITNYTPPANEGEFKCPKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKSCARIFKDRQSLAKHLVNYHSEYACEICGQKVQSKCEIVSHIRFSHPGCHLVCTICRNILRSRNDLVEHTRDHMNSYICQFCADALPSKIKLKMHILSLHRKILSLSCGVCLKLFETQHVLRDHVRLVHKDQLAPLTSCPVCGKNYGSKWKTYDHLNKSHGRIFKACKACLEVFDTEGQLQAHYDTAHANSFQNKNCVIPVSAPPIQQNNNCESDSDRDSSEQSDTENEREDGTEEEQKPDYFLDVTDSKISLLEKRLLGQKIKEEDKCSKITSPSILPPPPLLKNNTKKREEKSLTKKDESELNEINYSSNPQHNSSKRTVYVNSNDPSFCEICHKTWPAKKHLWQHYIRCHKSVAATVCGICLKTNKSYSSLQEHLRANHPTLLHGQGFGSNFICRICGRYHNASSKLKLHMAIHENFDWSLLDGPQKETKKEENGYQENSNNEINYDSLIEQVECSSGSDSDTETVVEAKVPAAVESSSDDEDDDDDEDDGEEEDGESESGASENSLEAQMLDNMLREKEISDNGNMHYGSSVSDDSSGASCFSAKSDDSSDDNESNSSNLEGNMFRCRPEELDSAIQSIKFECVDKIEIQMDNDYKFDLQTQTLNDNEIDAAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -