Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375804.1:19163869-19166119[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0094 0.47 11.7 5.2 1 23 79 102 79 102 0.94

2 17 2 1e+02 4.4 4.1 1 23 111 134 111 134 0.96

3 17 0.012 0.61 11.4 1.2 1 23 139 162 139 162 0.98

4 17 0.013 0.65 11.3 1.6 1 23 202 225 202 225 0.96

5 17 0.0014 0.072 14.3 2.3 1 23 234 257 234 257 0.96

6 17 6.7 3.3e+02 2.8 0.2 8 23 274 289 266 289 0.81

7 17 0.0038 0.19 12.9 0.6 1 23 294 317 294 317 0.95

8 17 0.079 4 8.8 3.1 1 23 326 349 326 349 0.93

9 17 0.053 2.7 9.4 1.2 1 23 358 381 358 381 0.95

10 17 3.4 1.7e+02 3.7 4.5 1 23 390 413 390 413 0.93

11 17 0.27 14 7.1 6.1 1 22 422 443 422 445 0.89

12 17 0.092 4.6 8.6 1.0 1 23 454 477 454 477 0.95

13 17 0.0052 0.26 12.5 2.2 1 23 486 509 486 509 0.96

14 17 0.62 31 6.0 1.6 1 23 518 541 518 541 0.93

15 17 0.27 14 7.1 6.1 1 22 550 571 550 573 0.89

16 17 0.0051 0.25 12.6 1.4 1 23 580 603 580 603 0.94

17 17 4.1 2.1e+02 3.4 2.0 2 23 613 635 612 635 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0094	0.47	11.7	5.2	1	23	79	102	79	102	0.94
2	17	2	1e+02	4.4	4.1	1	23	111	134	111	134	0.96
3	17	0.012	0.61	11.4	1.2	1	23	139	162	139	162	0.98
4	17	0.013	0.65	11.3	1.6	1	23	202	225	202	225	0.96
5	17	0.0014	0.072	14.3	2.3	1	23	234	257	234	257	0.96
6	17	6.7	3.3e+02	2.8	0.2	8	23	274	289	266	289	0.81
7	17	0.0038	0.19	12.9	0.6	1	23	294	317	294	317	0.95
8	17	0.079	4	8.8	3.1	1	23	326	349	326	349	0.93
9	17	0.053	2.7	9.4	1.2	1	23	358	381	358	381	0.95
10	17	3.4	1.7e+02	3.7	4.5	1	23	390	413	390	413	0.93
11	17	0.27	14	7.1	6.1	1	22	422	443	422	445	0.89
12	17	0.092	4.6	8.6	1.0	1	23	454	477	454	477	0.95
13	17	0.0052	0.26	12.5	2.2	1	23	486	509	486	509	0.96
14	17	0.62	31	6.0	1.6	1	23	518	541	518	541	0.93
15	17	0.27	14	7.1	6.1	1	22	550	571	550	573	0.89
16	17	0.0051	0.25	12.6	1.4	1	23	580	603	580	603	0.94
17	17	4.1	2.1e+02	3.4	2.0	2	23	613	635	612	635	0.88

Sequence Information

Coding Sequence: ATGCGTGAACGGTTGCCGCTCTGTCTGCTGAATGCAACCTATGAAAGTGTAGCAATGAGGTTAGATTTTCATCTAATAAAGTGTTGTGATACCATCACCTCAGATTCAAAAAAGGCAATTTTAACGTATCAAATGAACGAACATAAATTATCTGTAACAACTAATACGGAAAATGGAAACAGTATTACTACAACGACTAGCCAAATAAATAAACTAACACAATTTGCCACTTGTTTTGAATGTGATCAATGCAAGTATACAAGTAAACATAGATTCCAGTTAAAAAGACATATTTATCTGAAACATAAGCCTAATAAAATTAAGGAATGGTTTAAATGTGATCGATGTTTGTTTAAAACCATTTATAAACCATATTTTACAAAGCATCAAAAATTAAAACATTCTCCATTAACATTTCAATGTGAATTATGTGGGTTTAAAACTATGTTTAAAGAGGTTTTACAAAAACATATAAACAGAACGCATTCTTTACCAAAATTGCAAAAAATTGCAAAAGAAATGCTTTGTGATTTTGAAACCACCGAAGAAAATGCGCGTTTAAAAAAACCTAAATTAAATCTTTCAAGAAAATTACAGCAAAAATACAAATGCGATGGATGCGAATATTTTACTTTTTATGAAAGAGAGCTCAAAAAACATATAAATGAAAAACATCTTTTAAAAGAAATACAACAAAAATTCGAATGTGATCAGTGTGAATATAAAACGATTTATAAAAGTCATCTAAACAGGCATGCAAATGTAAAGCATCCTTTAAAAGAAACACAACAAAAATTTGAATGCGATCAGTGGGAATATAAAACTTTTTATAAAAATAATTTAAACAGACATGAAAATGCAAAGCATCTTTCGCAAAAGTTCCAATGCGAGCAGTGTGAATATATAACTTTTTATAAAGGAAACCTGAAGATACATATAAATGCAAAGCATCTTTTAAAAGATTTACAACAAAGATTCCAATGCGATCAGTGTGAATATAAAACTTTTTATAGAAATAGTCTAAACAGACATAAAAATGCAAAACATCTTTCAAAGGAATTACAACAAAAATTCCAATGCGATCAGTGTGAATATGAAACCCTTAGAAAAGAGCATTTGATAAATCATATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCCATTGCGACCAGTGTGAATATGAAACTTTTTATAAAAGATATTTAAACACTCATAAAAATGCAAAGCATTTTTCAAAAGATTTACTACAAAAATTTCAATGCGATCAGTGTGAATATAAAACTTTTTATAAACATCATCTAAACAGACATGAAACTGCAAAGCATCTTTCAAAAGAATTACATCGAAAATTCCAATGCGGTCAGTGTGAATATGAAACCCTCAGAAAAGAGCATTTGATAAATCATATAAATGCAAAGCATTTTTCAAAAGATTTACAACAAAAATTCCAATGCGAGCAGTGTGAATATAAAACTTTTTATAAAGGAAGCCTGAAGAGTCATATAAATTCAAAACATCTTTCAAGCAAATTACAACGAAAATTCCAATGCGATCAGTGTGAATTTAAAACTCTTAGAAAAGAGCGTTTGAAAAATCATATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTTCAATGCGATCAGTGTGAATATAAAACTTTTTATAAACATCATCTAAACAGACATGAAACTGCAAAGCATCTTTTATTACAACGAAAATTCCAATGCGAGCAGTGTGAATATAAAACTTTTTATAAAGGAAACCTGAAGATACATCTAAATGCAAAGCATCTTTCAAGCGAACTACAACGAAAAGTTCAATGCGATCAGTGTGAATACACAACTCTTTGTAAATCAAATCTGAAGACACATATAAATGCAAAGCATCTTTCAAAAGAATTACATCATAAATTCTAA
Protein Sequence: MRERLPLCLLNATYESVAMRLDFHLIKCCDTITSDSKKAILTYQMNEHKLSVTTNTENGNSITTTTSQINKLTQFATCFECDQCKYTSKHRFQLKRHIYLKHKPNKIKEWFKCDRCLFKTIYKPYFTKHQKLKHSPLTFQCELCGFKTMFKEVLQKHINRTHSLPKLQKIAKEMLCDFETTEENARLKKPKLNLSRKLQQKYKCDGCEYFTFYERELKKHINEKHLLKEIQQKFECDQCEYKTIYKSHLNRHANVKHPLKETQQKFECDQWEYKTFYKNNLNRHENAKHLSQKFQCEQCEYITFYKGNLKIHINAKHLLKDLQQRFQCDQCEYKTFYRNSLNRHKNAKHLSKELQQKFQCDQCEYETLRKEHLINHINAKHLSKDLQQKFHCDQCEYETFYKRYLNTHKNAKHFSKDLLQKFQCDQCEYKTFYKHHLNRHETAKHLSKELHRKFQCGQCEYETLRKEHLINHINAKHFSKDLQQKFQCEQCEYKTFYKGSLKSHINSKHLSSKLQRKFQCDQCEFKTLRKERLKNHINAKHLSKDLQQKFQCDQCEYKTFYKHHLNRHETAKHLLLQRKFQCEQCEYKTFYKGNLKIHLNAKHLSSELQRKVQCDQCEYTTLCKSNLKTHINAKHLSKELHHKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -