Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375801.1:1269770-1271488[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0047 0.23 12.7 3.3 1 23 24 47 24 47 0.94

2 16 0.00041 0.02 16.0 0.9 1 23 92 115 92 115 0.96

3 16 0.13 6.4 8.2 2.7 1 23 124 147 124 147 0.93

4 16 0.044 2.2 9.6 5.5 1 22 156 177 156 179 0.89

5 16 0.28 14 7.1 0.9 1 23 188 211 188 211 0.95

6 16 0.048 2.4 9.5 4.7 1 23 220 243 220 243 0.94

7 16 0.0052 0.26 12.5 3.7 1 23 252 275 252 275 0.96

8 16 8.7 4.4e+02 2.4 0.8 13 23 296 307 296 307 0.93

9 16 0.00049 0.025 15.7 0.8 1 23 316 339 316 339 0.96

10 16 0.044 2.2 9.6 5.5 1 22 348 369 348 371 0.89

11 16 0.28 14 7.1 0.9 1 23 380 403 380 403 0.95

12 16 0.048 2.4 9.5 4.7 1 23 412 435 412 435 0.94

13 16 0.0052 0.26 12.5 3.7 1 23 444 467 444 467 0.96

14 16 8.7 4.4e+02 2.4 0.8 13 23 488 499 488 499 0.93

15 16 0.042 2.1 9.7 1.6 1 23 508 531 508 531 0.93

16 16 0.14 6.9 8.1 4.1 1 23 540 563 540 563 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0047	0.23	12.7	3.3	1	23	24	47	24	47	0.94
2	16	0.00041	0.02	16.0	0.9	1	23	92	115	92	115	0.96
3	16	0.13	6.4	8.2	2.7	1	23	124	147	124	147	0.93
4	16	0.044	2.2	9.6	5.5	1	22	156	177	156	179	0.89
5	16	0.28	14	7.1	0.9	1	23	188	211	188	211	0.95
6	16	0.048	2.4	9.5	4.7	1	23	220	243	220	243	0.94
7	16	0.0052	0.26	12.5	3.7	1	23	252	275	252	275	0.96
8	16	8.7	4.4e+02	2.4	0.8	13	23	296	307	296	307	0.93
9	16	0.00049	0.025	15.7	0.8	1	23	316	339	316	339	0.96
10	16	0.044	2.2	9.6	5.5	1	22	348	369	348	371	0.89
11	16	0.28	14	7.1	0.9	1	23	380	403	380	403	0.95
12	16	0.048	2.4	9.5	4.7	1	23	412	435	412	435	0.94
13	16	0.0052	0.26	12.5	3.7	1	23	444	467	444	467	0.96
14	16	8.7	4.4e+02	2.4	0.8	13	23	488	499	488	499	0.93
15	16	0.042	2.1	9.7	1.6	1	23	508	531	508	531	0.93
16	16	0.14	6.9	8.1	4.1	1	23	540	563	540	563	0.94

Sequence Information

Coding Sequence: ATGGAAAATGGAAACAGTATTATTACAACGACTAGCCAAGCAGATAAACGTTACCAATTCGCTACTTGTTTTGAATGTGATCAATGCAAGTATACAAGTAAATACAACTTCCAGTTAAAAAGACATATTTATCTGAAACATATAGACAGAAAGCACTCTTTACCAAAATTGCAAAAAATTGCAAAGAAAATGCTTGGTAATTTTAAAACGACCAAAAAAAATGCTCGCTTAAAAAAACATAAAATTAATCGTCCAAGAAAATTACAGCAAAAATACAAATGCGATGAATGCGAATATTCAACTTTTTATAAAGGAGATCTAAACAAACATATAAATGCAAAACATCTTTCAAGAGAATTACAACAAAAATTCCAATGTGATCAGTGTGAATTTAAAACTCTTTCAAAAGAGCATCTGAAAAATCATATAAATGCAAAACATCTTTCAAAAGAATTACAACAAAAATTTCAATGCGACCAGTGTGAATATAAAACTTTTCATAGAAGTCATCTAAACAGACATGAAACTGCAAAGCATCTTTCAAAAGAATTACAACAAAAATTCCAATGTGATCAGTGTGAATATGAAACCCTTAGAAAAGAGCGTTTGAAAAATCACATAAATGCAAAGCATCTTTCAAGCGAACTTCAACAAAAATTCCAATGTGATCAGTGTGAATATACAACTTTTTATAGAAATCATCTAAACAGACATAAAAATGCAAAACATCTTTCAAAAGATTTACAACAAAATTTCCAATGCGATCAGTGTGATTATTTAACTTGTTATAAAAAGGACCTAAAAAGACATATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCCAATGTGATCATTATGAATACACAACTCTTTGTAAATCAAATCTGAAAACACATAAGAATACAAAGCATCTCTCAAGGGAATTACAACAAAAATTCCAATGCGATCAGTGTGAATATTCAACTTTTTCTAAAGGAGATCTAAACAAACATATAAATGCAAAACATCTTTCAAAAGAATTACAACAAAAATTTCAATGCGATCAGTGTGAATATAAAACTTTTCATAGAAGTCATCTAAACAGACATGAAACTGCAAAGCATCTTTCAAAAGAATTACAACAAAAATTCCAATGTGATCAGTGTGAATATGAAACCCTTAGAAAAGAGCGTTTGAAAAATCACATAAATGCAAAGCATCTTTCAAGCGAACTTCAACAAAAATTCCAATGTGATCAGTGTGAATATACAACTTTTTATAGAAATCATCTAAACAGACATAAAAATGCAAAACATCTTTCAAAAGATTTACAACAAAATTTCCAATGCGATCAGTGTGATTATTTAACTTGTTATAAAAAGGACCTAAAAAGACATATAAATGCAAAGCATCTTTCAAAAGATTTACAACAAAAATTCCAATGTGATCAATATGAATACACAACTCTTTGTAAATCAAACCTGAAAACACATAAGAATACAAAGCATCTCTCAAGGGAATTACAACAAAAATTCCAATGCGATCAGTGTGAATTTAAAACTCTTAGAAAAGAGAGTTTGAAAAAACATATAAATGCAAAGCATCTTTCAAGCGAACTACAACGAAAATTTCATTGCGATCAGTGTGAATATGAAACTCTGAGAAAAGATCATTTGAAAAGACATATAAATGCAAAGCATCTTTCAAAAGAATTACAACAAAAATTATAA
Protein Sequence: MENGNSIITTTSQADKRYQFATCFECDQCKYTSKYNFQLKRHIYLKHIDRKHSLPKLQKIAKKMLGNFKTTKKNARLKKHKINRPRKLQQKYKCDECEYSTFYKGDLNKHINAKHLSRELQQKFQCDQCEFKTLSKEHLKNHINAKHLSKELQQKFQCDQCEYKTFHRSHLNRHETAKHLSKELQQKFQCDQCEYETLRKERLKNHINAKHLSSELQQKFQCDQCEYTTFYRNHLNRHKNAKHLSKDLQQNFQCDQCDYLTCYKKDLKRHINAKHLSKDLQQKFQCDHYEYTTLCKSNLKTHKNTKHLSRELQQKFQCDQCEYSTFSKGDLNKHINAKHLSKELQQKFQCDQCEYKTFHRSHLNRHETAKHLSKELQQKFQCDQCEYETLRKERLKNHINAKHLSSELQQKFQCDQCEYTTFYRNHLNRHKNAKHLSKDLQQNFQCDQCDYLTCYKKDLKRHINAKHLSKDLQQKFQCDQYEYTTLCKSNLKTHKNTKHLSRELQQKFQCDQCEFKTLRKESLKKHINAKHLSSELQRKFHCDQCEYETLRKDHLKRHINAKHLSKELQQKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -