Lhir026825.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375797.1:27340269-27341990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.47 24 6.4 0.8 1 19 23 41 23 43 0.96 2 15 0.021 1.1 10.6 1.6 2 23 131 153 130 153 0.96 3 15 0.0027 0.14 13.4 5.0 1 23 162 185 162 185 0.98 4 15 2.2 1.1e+02 4.3 4.9 1 23 194 217 194 217 0.96 5 15 0.017 0.88 10.9 5.1 1 20 226 245 226 249 0.95 6 15 0.00078 0.039 15.1 2.2 2 23 258 280 257 280 0.95 7 15 0.07 3.5 9.0 6.4 1 23 289 312 289 312 0.98 8 15 0.55 27 6.2 5.7 1 23 321 344 321 344 0.96 9 15 0.0015 0.075 14.2 4.9 1 23 353 376 353 376 0.97 10 15 0.018 0.89 10.9 1.8 2 23 385 407 384 407 0.96 11 15 0.01 0.5 11.6 3.3 1 23 416 439 416 439 0.96 12 15 0.33 16 6.9 4.7 1 23 448 471 448 471 0.93 13 15 0.0035 0.17 13.1 1.1 1 23 480 503 480 503 0.97 14 15 0.0056 0.28 12.4 2.7 2 23 512 534 511 534 0.96 15 15 0.025 1.3 10.4 5.3 1 23 538 561 538 561 0.98
Sequence Information
- Coding Sequence
- ATGTCGGTTGCTTCAAAGTGTTATCGTTCGTCAACGGCTTTTTCTTGCTATGATTTACTGGAATCTTATAAATGCCGTCTTTGCAACTATATAACTAATGGAAAAACTGATTTATTCAATCACAATAGCGGATTTGAAGCCGTTGGTGACGAGGACAATTTCCAACAATGTGATCAGTGTAACGTTGGCAGTTTTTCCACTGTGTGGAGATATTTTCACAAATTAAAGTGTAATTTCAATGTAGAAAGATTAGTTGAAGCTCTCACCGATAATACGGATAATGGGAACAGTGTTACCACAGCGTATGATCAAAAAAATGAATCTATACAATTAGAAGATTTACAAATTCATGTAAAGAGAGAGGATTGCTTATCTGAATTAAAACCAATCCAATGCGATGACTGTGATTTTAAAACGACCAAGGAACTGTATTTAAGACGGCATAAAAAAATAAAACATCTTTCAAGCGAACTGCAACAAAGATTTCAATGTCATCAGTGCGAATTTACGACTATTTATAAGAAAAGCTTAAAAACTCATATAAACACTAAACATCTTTCAAAAGAATTACAACAAAGATTTCAATGCGACCAGTGTGAATATACAACTCTTCATAAAAGTGGTTTTAGACTACACAGAAAATATAAACATCTTTTGAGTGAAGTACAACAAAAATTCCAATGCGATCAGTGTGAATATACAACTATTCATAAAAGCTACCTAACAAGACATAAAAATTGCATACATCTTTCAAGCGAATTACAACAAATCCAATGCGATGACTGTGATTTTAAAACGACCCAGAAACGGTATTTAAGACGGCATAAACAAATAAAACATCTTTCAAGCGAACTGCAACAAAGATTTCAATGTCATCAGTGCGAATTTACGACTATTTATAAAATATGCTTAAAAACTCATATAAACACTAAACATCTTTCAAAAGAATTACAACAAAGATTTCAATGCGACCAGTGTGAATATACAACTCTTCATAAAAGTGGTTTTAGACGACACAGAAAATATAAACATCTTTGGAGTAAAGTACAACAAAAATTCCAATGCGATCAGTGTGAATATACAACTATTTATAAAAGCCACCTAACAAAACATAAAAATTCAAAACATCTTTCAAGCGAATTACAACAAATCCAATGCGATGACTGTGATTTTAAAACGACTATGAAACTGTATTTAAGACGGCATAAAAAAATAAAACATCTTTCAAGCGAACTGCAACAAAGATTTCAATGTCATCAGTGCGAATTTACGACTATTTATAAAGTATACTTAAAAACTCATATAAAGGCTAGACATCTTCCAAAAGAATTACAACAAAGATTTCAATGCGACCAGTGTGAATATACAACTGTTCATATAAGTGGTTTTAGACGACACAAAGAACATAAACATCTTCCAAGAGAACTACAACATATATTTCAATGCGATCAGTGTGAATATACAACTATTTATATAAGCTACCTAACAAGACATAAAAATTCCATACATCTTTCAAGCGAATTACAACAAATCCAATGCGATGACTGTGATTTTAAAACGACCAAGAAACGGTATTTAAGACAGCATAAAAAAATAAAGCATCCACAAAGATTTCAATGTCATCAGTGCGAATTTACGACTATTTATAAGATATGCTTAAAAGCCCATATAAACACTAAACATCTTTCAAGCGAATTACAACAAATCCAATGCGATGACTGA
- Protein Sequence
- MSVASKCYRSSTAFSCYDLLESYKCRLCNYITNGKTDLFNHNSGFEAVGDEDNFQQCDQCNVGSFSTVWRYFHKLKCNFNVERLVEALTDNTDNGNSVTTAYDQKNESIQLEDLQIHVKREDCLSELKPIQCDDCDFKTTKELYLRRHKKIKHLSSELQQRFQCHQCEFTTIYKKSLKTHINTKHLSKELQQRFQCDQCEYTTLHKSGFRLHRKYKHLLSEVQQKFQCDQCEYTTIHKSYLTRHKNCIHLSSELQQIQCDDCDFKTTQKRYLRRHKQIKHLSSELQQRFQCHQCEFTTIYKICLKTHINTKHLSKELQQRFQCDQCEYTTLHKSGFRRHRKYKHLWSKVQQKFQCDQCEYTTIYKSHLTKHKNSKHLSSELQQIQCDDCDFKTTMKLYLRRHKKIKHLSSELQQRFQCHQCEFTTIYKVYLKTHIKARHLPKELQQRFQCDQCEYTTVHISGFRRHKEHKHLPRELQHIFQCDQCEYTTIYISYLTRHKNSIHLSSELQQIQCDDCDFKTTKKRYLRQHKKIKHPQRFQCHQCEFTTIYKICLKAHINTKHLSSELQQIQCDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -