Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375800.1:4602350-4604062[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 6 3e+02 2.9 0.8 1 19 23 41 23 43 0.82

2 16 0.013 0.68 11.2 3.7 1 23 90 113 90 113 0.98

3 16 0.0064 0.32 12.2 1.2 1 23 122 144 122 144 0.98

4 16 0.51 25 6.3 2.3 1 23 153 176 153 176 0.95

5 16 0.0033 0.16 13.2 1.4 2 23 185 207 184 207 0.94

6 16 0.022 1.1 10.6 5.2 1 23 216 238 216 238 0.96

7 16 1.4 70 4.9 3.2 1 23 247 269 247 269 0.97

8 16 0.014 0.71 11.2 2.9 1 23 278 300 278 300 0.97

9 16 0.004 0.2 12.9 3.8 1 23 308 330 308 330 0.98

10 16 8.2e-05 0.0041 18.2 1.7 1 23 339 362 339 362 0.96

11 16 0.086 4.3 8.7 6.3 2 23 371 393 370 393 0.95

12 16 0.049 2.5 9.5 1.6 1 23 402 425 402 425 0.97

13 16 0.027 1.3 10.3 5.2 1 23 434 456 434 456 0.96

14 16 0.00062 0.031 15.4 1.6 1 23 465 487 465 487 0.98

15 16 0.00069 0.035 15.3 3.5 1 23 496 519 496 519 0.97

16 16 0.0087 0.44 11.8 1.7 2 23 529 551 528 551 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	6	3e+02	2.9	0.8	1	19	23	41	23	43	0.82
2	16	0.013	0.68	11.2	3.7	1	23	90	113	90	113	0.98
3	16	0.0064	0.32	12.2	1.2	1	23	122	144	122	144	0.98
4	16	0.51	25	6.3	2.3	1	23	153	176	153	176	0.95
5	16	0.0033	0.16	13.2	1.4	2	23	185	207	184	207	0.94
6	16	0.022	1.1	10.6	5.2	1	23	216	238	216	238	0.96
7	16	1.4	70	4.9	3.2	1	23	247	269	247	269	0.97
8	16	0.014	0.71	11.2	2.9	1	23	278	300	278	300	0.97
9	16	0.004	0.2	12.9	3.8	1	23	308	330	308	330	0.98
10	16	8.2e-05	0.0041	18.2	1.7	1	23	339	362	339	362	0.96
11	16	0.086	4.3	8.7	6.3	2	23	371	393	370	393	0.95
12	16	0.049	2.5	9.5	1.6	1	23	402	425	402	425	0.97
13	16	0.027	1.3	10.3	5.2	1	23	434	456	434	456	0.96
14	16	0.00062	0.031	15.4	1.6	1	23	465	487	465	487	0.98
15	16	0.00069	0.035	15.3	3.5	1	23	496	519	496	519	0.97
16	16	0.0087	0.44	11.8	1.7	2	23	529	551	528	551	0.96

Sequence Information

Coding Sequence: ATGTCGGTTTTTTCTAAGTGCTGCCGTTCGACGCCGGGTTTTTCCTGCCATGATTGCCTAGAATCTTATAGATGCAGTCAATGCAACTATGAAACCAATGAAAAGATAGGTTATGTCAATCACAATTGTCAATATCTTGACAATCTGAATGAAGCCAGTTTTAAACGATGCCAACATTGTAAAGTGGGTAGCTTTTCGATTGTGTGGAGATGCTTTCATGACAGAAACTGTGCTCTAAGATTGGATCCATTGGATGTAAAAACGAAATTTCAATGCGATTTTTGTAAATTTACAACGGTTTATGAAAGATATCTAAAAAAACATATAAATAAAAAGCATCTTTCAAGTGAATTACAGAAAAAATTTCAATGCGATCAATGTGACTATATAACTGCTTATGGCAAAAACTTAAAAACGCATAAAATGAGACATCTTTCAAGCAAACTGCAGCCAAAGTTTCAATGCGATCAGTGTGAATTTGCAACACTCTACAAAAGTAATTTTGAAAAACATAAAATTAAAAAACACTTTTTATGTGATTCACAAAAACTTCAATGTGATCAGTGTAAATACACAACTGTTTATGCAGAAAACCTAAAAAGACATAAATACCGACAACATATTTCAACTGAATTACAAAAAAAGTTTCAATGCGATCAGTGTGAATATACAACTGTATATAAACATCATTTAAAAACTCATAAAGTAATTCATCTTCCAAGTGAATTACAACAAAGATTTCAATGCGATCAATGTAAATTCACAACTATTTACAAAAAAATTTTAAAAACTCATAAGATAAAGCACCTCTCAAATGAATTACAACACAAGTTTCAATGCGACCAATGTGAATATACAACTATTTATAAACATCTTTTAAAAGCGCATAAAGTGAAGCACATTCCAGGTGAATTGCAAAGATTTCAATGCGATCACTGTGAATATACATCAGCTTATGAAAAAAACCTAAAATCCCATAAAATGAAGCATCTTTCAAGCAAATTGCAGCAAAAGTTTCAATGCGATCAGTGTGGATATACAACAATCTACAGAAGTAATTTAGAAAAACACAAAATCAAAAAACACTTTTTATGTGATTTACAAAAACTTCATTGCGATCAGTGTAAATACACAACTGTTCATACAGAAAATCTAAAAAGACATAAGAACCGAAAGCATCTTTCAACTGAATTACAAAAAAAATTCCAATGCGATCAGTGTATATATACAACTGGCTATAAAGTCAATCTAAAGACGCATCAAAACAGAAACCATCTTTCATGCGAATCACAACAAAATTTCCAATGCGATCAATGTGAATATACAACTATTTATAAACATCATTTAAAAACACATAAAGTAATTCACATTCCAAGTGAATTACAACAAAAATTCCAATGCAATCAATGCGAATATACAACTATTTATCAAAAAAACTTAAATGCGCATAAAATAAAGCATCGTTCAAGCGAATTGCAACTAAAGTTTCCATGCGATCAGTGTGAATATACAACTGTTCATAAAGAAAACCTAAAAAGACATAAAAATAGAAAGCATCCATCAAGTGAATTAGAAAAAACACTTCAATGCGATCAGTGTGAATACACAACTGTTTATAAAGGATATCTAAAAAACCATAAAAATAAAAAGCATCTTTTGAGTGAATTACAAAAAAAATTTCATTGCGATCAGTGCACATATACAACTGTTTGA
Protein Sequence: MSVFSKCCRSTPGFSCHDCLESYRCSQCNYETNEKIGYVNHNCQYLDNLNEASFKRCQHCKVGSFSIVWRCFHDRNCALRLDPLDVKTKFQCDFCKFTTVYERYLKKHINKKHLSSELQKKFQCDQCDYITAYGKNLKTHKMRHLSSKLQPKFQCDQCEFATLYKSNFEKHKIKKHFLCDSQKLQCDQCKYTTVYAENLKRHKYRQHISTELQKKFQCDQCEYTTVYKHHLKTHKVIHLPSELQQRFQCDQCKFTTIYKKILKTHKIKHLSNELQHKFQCDQCEYTTIYKHLLKAHKVKHIPGELQRFQCDHCEYTSAYEKNLKSHKMKHLSSKLQQKFQCDQCGYTTIYRSNLEKHKIKKHFLCDLQKLHCDQCKYTTVHTENLKRHKNRKHLSTELQKKFQCDQCIYTTGYKVNLKTHQNRNHLSCESQQNFQCDQCEYTTIYKHHLKTHKVIHIPSELQQKFQCNQCEYTTIYQKNLNAHKIKHRSSELQLKFPCDQCEYTTVHKENLKRHKNRKHPSSELEKTLQCDQCEYTTVYKGYLKNHKNKKHLLSELQKKFHCDQCTYTTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -