Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375801.1:22738527-22740218[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.13 6.4 8.2 2.3 2 23 94 116 93 116 0.94

2 15 0.0021 0.11 13.8 0.2 1 23 125 148 125 148 0.95

3 15 0.13 6.3 8.2 0.6 1 23 157 180 157 180 0.95

4 15 0.066 3.3 9.1 0.4 1 23 190 213 190 213 0.96

5 15 0.02 1 10.7 4.8 2 23 223 244 222 245 0.94

6 15 0.0015 0.073 14.3 2.4 1 23 254 277 254 277 0.96

7 15 0.0027 0.14 13.4 2.0 1 23 286 309 286 309 0.96

8 15 0.0031 0.15 13.2 1.6 2 23 319 341 318 341 0.94

9 15 0.045 2.2 9.6 6.5 1 23 346 369 346 369 0.98

10 15 0.00028 0.014 16.5 2.5 1 23 378 401 378 401 0.96

11 15 0.043 2.2 9.6 1.6 1 23 410 432 410 432 0.96

12 15 0.095 4.7 8.6 0.9 1 23 446 469 446 469 0.95

13 15 0.0093 0.47 11.7 1.5 1 23 474 497 474 497 0.96

14 15 0.39 20 6.6 2.4 1 23 506 529 506 529 0.95

15 15 0.64 32 5.9 2.0 3 23 537 561 536 561 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.13	6.4	8.2	2.3	2	23	94	116	93	116	0.94
2	15	0.0021	0.11	13.8	0.2	1	23	125	148	125	148	0.95
3	15	0.13	6.3	8.2	0.6	1	23	157	180	157	180	0.95
4	15	0.066	3.3	9.1	0.4	1	23	190	213	190	213	0.96
5	15	0.02	1	10.7	4.8	2	23	223	244	222	245	0.94
6	15	0.0015	0.073	14.3	2.4	1	23	254	277	254	277	0.96
7	15	0.0027	0.14	13.4	2.0	1	23	286	309	286	309	0.96
8	15	0.0031	0.15	13.2	1.6	2	23	319	341	318	341	0.94
9	15	0.045	2.2	9.6	6.5	1	23	346	369	346	369	0.98
10	15	0.00028	0.014	16.5	2.5	1	23	378	401	378	401	0.96
11	15	0.043	2.2	9.6	1.6	1	23	410	432	410	432	0.96
12	15	0.095	4.7	8.6	0.9	1	23	446	469	446	469	0.95
13	15	0.0093	0.47	11.7	1.5	1	23	474	497	474	497	0.96
14	15	0.39	20	6.6	2.4	1	23	506	529	506	529	0.95
15	15	0.64	32	5.9	2.0	3	23	537	561	536	561	0.87

Sequence Information

Coding Sequence: ATGAGTGACTATTTGCAGACATTTAAGTGTTACTCTTCTCTTCTGGCGTATCAATGTAAATCTTGCAATTTTGCTACAAATGAAAAAGTTCAAAAATTTAATCATAATTGCAAATTTGGAGGTTATGATACTTTGAAGGTAGCTTTTAAACGATGTAGACGATGCAAAGTGGGTAGTTACTCGTTTGTTTGGCGTTATTATCATAAAATAAAATGTGCCAATACCAATAATAATTTGTTAGTAAAAAAATTCAAAAGTTATTCATTAGAAAAACTACTTGAATGTGATCAGTGTAACTATAAAACTCACCAGAGCCGTGATTTAAAATTACATAAGATTAGAGAGCATGTGTCTATCGAACCGGAAAAATGGTTCAAATGTGATGATTGTGATTACAGCACTAAACTTGAGAGTGGTTTAATTGTACATAAAAAAGAGGTTCACATTCGATTTGATTTATCTAAAGTTTTCAACTGCAACGAGTGTGAGTACAAAACTAATTATCTAGGCTCCTTAGTAATCCATAATAAAATAAAACATGATGAAATTGAATTGCAAGCAACTGATTTTGTCTGCCGTGAGTGTGGGTTTCAGACTGAGTTGATATCTAATCTAATAAACCATAAGATGAAAAGCCATACGCTTGTTGAATTGCAAACATATCTTAAATGCAGCGAATGTAACTTTAAAACAAAGGATAAACGCTATCTAACAGAGCATGAGAAAAAACATCATACTCAAATTGAATTGGAAGCAGTTTTCAACTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATATGAAACAAAAACATGGCTTAACTGATTTGCAAACAATATTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAGGAAATCTATCAAGGCATAAGAAAGAAAAACATGGCTTAACTGATTTGCAAACAATTTTAAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAATCAAATCTATCAAGGCATAAGAAAGCAAAACATGTCTTAACAATTTTTAAGTGCAAAGAGTGTGAGTATGAGACCAGTTTTAAATGTTATCTAACACAGCATACAAAAACGAAACATATTCTTATTGATTTCCAAAAAAATTTCAATTGCGATGAGTGTGATTACAAAACTGATTATAAAAGTAATCTAACCAAGCATAAGAAGATAAAACATACTTCAAATGAATTGCAAACAATTTTTGCCTGCAATGAGTGTGAGTATCAAACCATGTATAAATCTAATTATACAAGCCATAAGGAAAGCCATAAGAAAATAAAGCATACTCCAATTGAATTGCAAGCTATCTTTAAATGCAATGATTGTGAGTTTGAAACGAGGCTTAAATCAGTCCTTGCAAATCATTTCAGAGCGAAACATGAATTGCCAAATTTTTTCTGCAATGATTGTGAGTATCAAACCAGCTTTAAAGCTAGTTTCATACAGCATCAGAAAGTAATGCATACTCCAATTGAATTGCAAACAATTTTTGCCTGCAATGAGTGTGAGTATAAAACCTTGTATAAATCTAATTATACAACCCATAAGAAAATAAAGCATACTCTAATTGAATCGCAAGAATGCTTTCAATCCTTGAAATGCAAGTATAAATCTAACAAAGAATATAATTTGAGAAATCACGTAAACAAAAAACATAAAACATAA
Protein Sequence: MSDYLQTFKCYSSLLAYQCKSCNFATNEKVQKFNHNCKFGGYDTLKVAFKRCRRCKVGSYSFVWRYYHKIKCANTNNNLLVKKFKSYSLEKLLECDQCNYKTHQSRDLKLHKIREHVSIEPEKWFKCDDCDYSTKLESGLIVHKKEVHIRFDLSKVFNCNECEYKTNYLGSLVIHNKIKHDEIELQATDFVCRECGFQTELISNLINHKMKSHTLVELQTYLKCSECNFKTKDKRYLTEHEKKHHTQIELEAVFNCNECEYKTPFQRNLSRHMKQKHGLTDLQTIFKCNECEYKTPFQGNLSRHKKEKHGLTDLQTILKCNECEYKTPFQSNLSRHKKAKHVLTIFKCKECEYETSFKCYLTQHTKTKHILIDFQKNFNCDECDYKTDYKSNLTKHKKIKHTSNELQTIFACNECEYQTMYKSNYTSHKESHKKIKHTPIELQAIFKCNDCEFETRLKSVLANHFRAKHELPNFFCNDCEYQTSFKASFIQHQKVMHTPIELQTIFACNECEYKTLYKSNYTTHKKIKHTLIESQECFQSLKCKYKSNKEYNLRNHVNKKHKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -