Lhir009130.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375801.1:6562271-6564229[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0084 0.42 11.9 4.2 1 23 113 136 113 136 0.94 2 16 0.58 29 6.1 3.3 1 23 145 168 145 168 0.97 3 16 0.012 0.61 11.4 1.0 1 23 173 196 173 196 0.98 4 16 0.00085 0.043 15.0 1.0 1 23 236 259 236 259 0.96 5 16 0.0041 0.2 12.9 3.3 1 23 268 291 268 291 0.97 6 16 0.014 0.7 11.2 1.2 1 23 300 323 300 323 0.93 7 16 0.27 13 7.2 1.9 1 23 332 355 332 355 0.92 8 16 0.024 1.2 10.5 1.1 1 23 364 387 364 387 0.94 9 16 0.25 13 7.2 1.5 1 23 396 419 396 419 0.94 10 16 0.0029 0.15 13.3 2.1 1 23 428 451 428 451 0.94 11 16 0.27 13 7.2 1.9 1 23 460 483 460 483 0.92 12 16 0.45 23 6.4 0.7 1 23 492 515 492 515 0.93 13 16 0.25 13 7.2 1.5 1 23 524 547 524 547 0.94 14 16 0.0029 0.15 13.3 2.1 1 23 556 579 556 579 0.94 15 16 0.066 3.3 9.1 2.2 1 23 588 611 588 611 0.92 16 16 0.0013 0.065 14.4 1.0 1 23 620 643 620 643 0.96
Sequence Information
- Coding Sequence
- ATGTCGGTTTTTTCGAAGTGCTGCCGCTCCTCCTCGGTTTTTTCCTGTTACGATTCCCTGGAATCTTATAGATGCCGTTTATGCAACTTTGAAACAAATGAAAAAATTGTTTATTTTATTTACAATTGTGAGCTTTTAGATGTTTTGGATGAAGCCTCTTTCGAAAAATGTCAACGTTGCAGAGTGGGTAGCTTTTCGTATGTGTGGAGATACTTTCACAAAAGAAAGTGTAATTTTATAGAACATAAATCATCTGTAACAACTAATACGGAAAATGGAAACAGTATTACTACAACGACTTGCCAAACAAATAAACCTAAACAATTTGCTACTTGTTTTGAATGTGATCAATGCAAATATACAAGTAAACATAGATTCCAGTTAGAAAGACATATTTATCTGAAACATAAGCTCAATGAAATTAAGGAATGGTTTAAATGTGATCGATGTTGGTTTCAAACCATTTATAAACCATATTTTACAAAGCATCAAAAATTAAAACATTCTTCATTAACATTTCAATGTGAATTATGTGGGTTTAAAACTATGTTTAAAGGGGTTTTACAAAAACATATAAACAGAACGCATTCTTTACCAAAATTCGAAAAAATTGCAAAAGAAATGCTTTGTGATTTTGAAACCACCGAAAAAAATGCGCGTTTAAAGAAACATAAATTTAATCTTCCAAGAAAATTACAGCAAAAATACAAATGCGATGAATGCGAATATTCAACTTTTTATAAAGGAGATCTAAACAAACATTTAAATGCAAAACATCTTTCAAAAGAATTACAACAAAAATTCCAATGCGATCAGTGTGATTTTTCCACTTGTTATAAACAGGGCTTAAAAATACATATAAACTCAAAACATTTTTCAGGCAAATTACAACAAACATTCCAATGTGGTCAGTGTGAATACAAAGCTTTTAGAAAAGAGTATTTGAAAAATCATATAAATGCAAAGCATCTTTCAAAAGATTTGCAACAAAAATTCCAATGCGATCAGTGTGCATATAAAACTTTTTATAGAAATAGTCTAAACAGACATGAAAATGCAAAACATCTTTCAAAAGATTTACAACGAAAATTCCAATGCGAGCAGTGTGAATATACAACTTTTTATGAAGGAAACCTGAAGATACATAAAAATGCAAAACATCTTTCAAGCAAATTACAACGAAAATTCCAATGCGATCAGTGTGAATATAAAACTCTTAGAAAAGAGCGTTTGAAAAATCATATAAATGCAAAGCATCTTTTGAAAGATTTACAACAAAAATTCCAATGCGATCAGTGTGAATATAAAACTTTTAGAAAAGAGTATTTAAAAAATCATATAAATGCAAAGCATCTTTCAAAAGATTTGCAACAAAAATTCCAATGCGATCAGTGTGCATATAAAACTTTTTATAGAAATAGTCTAAACAGACATGAAAATGCAAAACATCTTTCAAAAGATTTACAACGAAAATTCCAATGCGAGCAGTGTGAATATACAACTTTATATGAAGGAAACCTGAAGATACATAAAAATGCAAAACATCTTTCAAGCAAATTACAACGAAAATTCCAATGCGATCAGTGTGAATATAAAACTCTTAGAAAAGAGCGTTTGAAAAATCATATAAATGCAAAGCATCTTTTGAAAGATTTACAACAAAAATTCCAATGCGATCAGTGTGAATATAAAACTTTTAGAAAAGAGTATTTGAAAAATCATATAAATGCAAAGCATCTTTCAAAAGATTTGCAACAAAAATTCCAATGCGATCAGTGTGAATATAAAACTTTTTATAGAAATAGTCTAAACAGACATGAAAATGCAAAACATCTTTCAAAAAATTTACAACGAAAATTCCAATGCGAGCAGTGTGAATATACAACTTTTTATAAAGGAAACCTGAAGATACATATAAATGCAAAACATCTTTCAAGCGAACGACAACTAACATTTTAA
- Protein Sequence
- MSVFSKCCRSSSVFSCYDSLESYRCRLCNFETNEKIVYFIYNCELLDVLDEASFEKCQRCRVGSFSYVWRYFHKRKCNFIEHKSSVTTNTENGNSITTTTCQTNKPKQFATCFECDQCKYTSKHRFQLERHIYLKHKLNEIKEWFKCDRCWFQTIYKPYFTKHQKLKHSSLTFQCELCGFKTMFKGVLQKHINRTHSLPKFEKIAKEMLCDFETTEKNARLKKHKFNLPRKLQQKYKCDECEYSTFYKGDLNKHLNAKHLSKELQQKFQCDQCDFSTCYKQGLKIHINSKHFSGKLQQTFQCGQCEYKAFRKEYLKNHINAKHLSKDLQQKFQCDQCAYKTFYRNSLNRHENAKHLSKDLQRKFQCEQCEYTTFYEGNLKIHKNAKHLSSKLQRKFQCDQCEYKTLRKERLKNHINAKHLLKDLQQKFQCDQCEYKTFRKEYLKNHINAKHLSKDLQQKFQCDQCAYKTFYRNSLNRHENAKHLSKDLQRKFQCEQCEYTTLYEGNLKIHKNAKHLSSKLQRKFQCDQCEYKTLRKERLKNHINAKHLLKDLQQKFQCDQCEYKTFRKEYLKNHINAKHLSKDLQQKFQCDQCEYKTFYRNSLNRHENAKHLSKNLQRKFQCEQCEYTTFYKGNLKIHINAKHLSSERQLTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00853130;
- 90% Identity
- -
- 80% Identity
- -