Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375800.1:16525628-16527595[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.2 10 7.5 1.3 2 23 113 135 112 135 0.94

2 16 0.33 16 6.9 8.6 1 23 144 167 144 167 0.97

3 16 0.00054 0.027 15.6 0.9 1 23 208 231 208 231 0.94

4 16 0.02 1 10.7 2.7 1 23 240 263 240 263 0.98

5 16 0.00014 0.0072 17.4 1.6 1 23 272 295 272 295 0.98

6 16 0.0082 0.41 11.9 3.3 1 23 304 327 304 327 0.98

7 16 0.0092 0.46 11.7 0.4 1 23 336 359 336 359 0.93

8 16 0.079 4 8.8 8.4 1 23 368 391 368 391 0.97

9 16 0.015 0.77 11.0 0.5 1 23 400 423 400 423 0.97

10 16 0.013 0.65 11.3 0.4 1 23 432 455 432 455 0.93

11 16 0.011 0.53 11.6 5.7 1 23 464 487 464 487 0.97

12 16 0.2 10 7.5 2.4 1 23 496 519 496 519 0.97

13 16 2.6 1.3e+02 4.0 4.4 1 23 528 551 528 551 0.96

14 16 0.0021 0.11 13.7 1.3 1 20 560 579 560 582 0.93

15 16 0.003 0.15 13.3 5.8 1 23 591 614 591 614 0.98

16 16 0.00021 0.011 16.9 1.7 1 23 623 646 623 646 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.2	10	7.5	1.3	2	23	113	135	112	135	0.94
2	16	0.33	16	6.9	8.6	1	23	144	167	144	167	0.97
3	16	0.00054	0.027	15.6	0.9	1	23	208	231	208	231	0.94
4	16	0.02	1	10.7	2.7	1	23	240	263	240	263	0.98
5	16	0.00014	0.0072	17.4	1.6	1	23	272	295	272	295	0.98
6	16	0.0082	0.41	11.9	3.3	1	23	304	327	304	327	0.98
7	16	0.0092	0.46	11.7	0.4	1	23	336	359	336	359	0.93
8	16	0.079	4	8.8	8.4	1	23	368	391	368	391	0.97
9	16	0.015	0.77	11.0	0.5	1	23	400	423	400	423	0.97
10	16	0.013	0.65	11.3	0.4	1	23	432	455	432	455	0.93
11	16	0.011	0.53	11.6	5.7	1	23	464	487	464	487	0.97
12	16	0.2	10	7.5	2.4	1	23	496	519	496	519	0.97
13	16	2.6	1.3e+02	4.0	4.4	1	23	528	551	528	551	0.96
14	16	0.0021	0.11	13.7	1.3	1	20	560	579	560	582	0.93
15	16	0.003	0.15	13.3	5.8	1	23	591	614	591	614	0.98
16	16	0.00021	0.011	16.9	1.7	1	23	623	646	623	646	0.97

Sequence Information

Coding Sequence: ATGCCGGTTTTTTCTAAATCCTACCGCTCGGGTACAACTTTTTCTTGTTATGATTTACTAGAGTCTTATGTATGCCATTTTTGCAACTATAAAACAAATGAAAAAACTCGAAAATTTAACCATAGTTGTGGAATTGGTGACGTTTTGGATGAGCCGATATTTAGACAATGCTACCGCTGTAAAGAAGGTAGTTCTTCGTATGTGTGGCACTATTTTCATACTATGAAATTTCATTTTGATGAAGATCCATCAATGGAGTTTTTAACAAATAAGGATGAAAGTTCAACTACAAAAATTAATCAAATACGTAAGACTGAACAATTTCAACCATGTTCTCAATGTGATCAGTGTGATCTTACGCTTGGAAGCAAAAGTGAAGTGAAAAGTCACAAGCATGTAAATCATACATCGCCTAAGTTACAAAAATGGTTTTATTGCAATCAATGTTATTTTAAAACTAAATATAACCATCACTTAAAAGATCACATAAATAGAAAACATGTACCAAATGAGTTAAAGAAATGGCTCCGATGTGATCAGTGCGAATTTGAAACTTTGTATAAAACGGCGTTCAATAGTCATAAAATATCAAAACATCTTTCAGACGAATTACAACTAAAATTTGAATGCGATCAGTGTGAATATACAACTGTTCGTAAAGGAGACCTAAAAAGACATAAAAATGCAAAACATTTTTCAAGCGAATTACGAGAAACGTTTCAATGCGATCAGTGTGAATTTACAACAGTTTATAAACTTTCCTTATATAATCATATGAAAAAAAAACATTTGTCAAGCGAATCTCTACAAAAATTTGAATGCGATCAGTGTGAATATACAACTGTTCGTAAAGGAGACCTAAAAAGACATAAAAATACAAAACATTTTTCAAGCGAATTACGGGAAACGTTTCAATGCGATCAGTGTGAATTTACAACAGTTTATAAATTTTCCTTATATAATCATATGAAAAGAAAACATTTGTCAAGCGAATCTCAAGAAAAATTTGCATGCGATCAGTGCGAATATACAACTATAGAAAAGGGTAATCTTAAAAGACATAATATCATGAAACACCTTCCACGTGAATTTCAAAAAAAATTTCATTGCAAACATTGTCATTATAAAACTATTTATAAGACTGCTTTGAAAATGCATATGAATATAAAACATCTTTCAGGTAACTTACAACAAAAATTCCCATGCGATCAATGTGATTATGCAGCAGTTTATAAACTTTCCTTATATAATCATATGAAAAGAAAACATTTGTCAAGCGAATCTCAACAAAAATTTGCATGCGATCAGTGCGAATATACAACTATAGAACAGGGTAATCTTAAAAAACATAATATTATGAAACACCTTCCACGTGAGTTTCAAAAAAAATTTCATTGCAAAGATTGTCATTATAAAACTATTTATAAGGCTGCTTTGAAAATGCATATGAATAGAAAACATCTTTCAGGTGATTTACAACAAAAATTCCCATGCGATCAATGTGAATATATGACTGCCTGTAAAGGAGACTTAAAAAGGCATAAAAATACAAAGCATCTCTTAAGCGAACTACGACAAACATTTCAATGCGATCAGTGTAATTTTATAACATTCTATAAACATTTCTTAAATGGCCATATAACGAAAAAGCATATGTCAAGTGAATTTCAACAAATATTCAAATGCGACCAGTGTGAATACACAACTATGGAAAAGAGTAATTTAAAAAGACATATTCCAAAGCATCTCTCAAGTGAATTACAACAAAAATTTCAATGCAACAATTGTCATTTTAAAACTATTTATAAAGATAGTTTGAGAAAGCATATAAAAAGAAAACATCTTTTAGATGAATTAGAACAAAAATTTCAATGCGATCAATGTGAATATACAACTGCTCGTAAAGGAGACCTAACAAGACATAAAAATAGAAAACATCTTTTAAGCGAATTAGAACAAACATTTTAA
Protein Sequence: MPVFSKSYRSGTTFSCYDLLESYVCHFCNYKTNEKTRKFNHSCGIGDVLDEPIFRQCYRCKEGSSSYVWHYFHTMKFHFDEDPSMEFLTNKDESSTTKINQIRKTEQFQPCSQCDQCDLTLGSKSEVKSHKHVNHTSPKLQKWFYCNQCYFKTKYNHHLKDHINRKHVPNELKKWLRCDQCEFETLYKTAFNSHKISKHLSDELQLKFECDQCEYTTVRKGDLKRHKNAKHFSSELRETFQCDQCEFTTVYKLSLYNHMKKKHLSSESLQKFECDQCEYTTVRKGDLKRHKNTKHFSSELRETFQCDQCEFTTVYKFSLYNHMKRKHLSSESQEKFACDQCEYTTIEKGNLKRHNIMKHLPREFQKKFHCKHCHYKTIYKTALKMHMNIKHLSGNLQQKFPCDQCDYAAVYKLSLYNHMKRKHLSSESQQKFACDQCEYTTIEQGNLKKHNIMKHLPREFQKKFHCKDCHYKTIYKAALKMHMNRKHLSGDLQQKFPCDQCEYMTACKGDLKRHKNTKHLLSELRQTFQCDQCNFITFYKHFLNGHITKKHMSSEFQQIFKCDQCEYTTMEKSNLKRHIPKHLSSELQQKFQCNNCHFKTIYKDSLRKHIKRKHLLDELEQKFQCDQCEYTTARKGDLTRHKNRKHLLSELEQTF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -