Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375803.1:16138360-16140024[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.19 9.8 7.6 2.9 2 23 125 146 124 146 0.96

2 14 0.83 42 5.6 2.5 2 23 154 175 153 175 0.97

3 14 0.25 13 7.2 1.0 1 23 182 204 182 204 0.98

4 14 0.0025 0.13 13.5 2.3 1 23 213 235 213 235 0.98

5 14 0.0026 0.13 13.5 6.2 1 23 245 267 245 267 0.98

6 14 0.0037 0.19 13.0 1.9 1 23 276 298 276 298 0.98

7 14 0.0015 0.073 14.3 2.2 1 23 307 329 307 329 0.98

8 14 8.8e-05 0.0044 18.1 3.9 1 23 338 360 338 360 0.98

9 14 0.00024 0.012 16.7 3.1 1 23 369 391 369 391 0.98

10 14 0.0062 0.31 12.3 4.0 1 23 400 422 400 422 0.97

11 14 0.00098 0.049 14.8 5.5 1 23 431 453 431 453 0.98

12 14 0.011 0.54 11.5 3.4 1 23 462 485 462 485 0.95

13 14 0.00046 0.023 15.8 2.5 1 23 494 516 494 516 0.98

14 14 0.087 4.4 8.7 3.5 1 23 525 548 525 548 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.19	9.8	7.6	2.9	2	23	125	146	124	146	0.96
2	14	0.83	42	5.6	2.5	2	23	154	175	153	175	0.97
3	14	0.25	13	7.2	1.0	1	23	182	204	182	204	0.98
4	14	0.0025	0.13	13.5	2.3	1	23	213	235	213	235	0.98
5	14	0.0026	0.13	13.5	6.2	1	23	245	267	245	267	0.98
6	14	0.0037	0.19	13.0	1.9	1	23	276	298	276	298	0.98
7	14	0.0015	0.073	14.3	2.2	1	23	307	329	307	329	0.98
8	14	8.8e-05	0.0044	18.1	3.9	1	23	338	360	338	360	0.98
9	14	0.00024	0.012	16.7	3.1	1	23	369	391	369	391	0.98
10	14	0.0062	0.31	12.3	4.0	1	23	400	422	400	422	0.97
11	14	0.00098	0.049	14.8	5.5	1	23	431	453	431	453	0.98
12	14	0.011	0.54	11.5	3.4	1	23	462	485	462	485	0.95
13	14	0.00046	0.023	15.8	2.5	1	23	494	516	494	516	0.98
14	14	0.087	4.4	8.7	3.5	1	23	525	548	525	548	0.94

Sequence Information

Coding Sequence: ATGTCCGTTTTTTCTAAATGTCTCCGTTCGTCTACGGTTTTTTCCTGTAATGATTTATTGGAGTCTTACAGATGCCGTTTCTGCAATTATAAAACCAATGAAAAAATTTGTTATTTTCAACACAATTGTAAATTTTTGGACGTTGTGGATGAGGTTAGTTTTAAACAATGTCAACATTGTAAAGTGGGTACCTTTTCCTTAGGGTGGAATTATTTTCACAGTAGAAACTGTAATTATGATGAAGATCTATCTGTAGAAGTTTTAGCAAATAAGACAAAAAATGTTACAAGGTCTTTTAAAAAACAACTAAACAAAAATCGTGAAAAACATGAAAAAAGAAAACATTCTTCAAGTGGATTACAACAAAAACTTCAATGCGATCAGTGTGAATATACAACTATTTATAAACATGTGTTAAAGACACATAAATTAAAGCATCTTTCAAAAGAATTATATTCTCAATGTGATCAGTGTGAATTTACAACTATTTATAAACATGTTTTAGAAACACATAAATTGAAGCATCTTTCAAAAGAATTACATTTTCAATGCGATCAGTGTGAATATGCAACTATTTATAAAAATATTTTAAAAACACATAAATTAACTCATTTTTATAGTGAATCACGTCAAAGATTTGAATGCGATCAGTGTGAATATAAAACTATTTATAAAAGATACTTAAGAAAACACATAAGCAGACATTATGGTTTAGGAGAATTTCAGCGAAAACATCAATGCGATGAGTGTGATTATACAACTATATATAAATGTAACTTAAAATTGCATCAAAAGAAGCATCTCTCAAGAGAATTGCAAAAAAGGTTTCAATGCGATGAATGTGAATATACAACTATTTATAAACATGCTTTAGAAACACATAAAATAAAGCATATTTCAAGCGATGTTCGTCAAAAATTCCAATGCGATGAATGTGAATTTACAACTACAGATAAAAATTACTTAAGAACGCATAAAATAAAGCATCTTTCAAATGGATTACAAGAAAAATTTCAATGCGATCACTGTGAATATACAACTATTCGGAAAAGTAATCTAAAAAGTCACAAACTGATGCATCTTTCAAGTGAATTTCAACAAAAATTTCAATGCGATTATTGTGAATATACAACTATTCGGAAAAGTTATTTAAAAAGTCACAAATTGAAGCATATTTCAAGCGATGTTCGTAAAAAATTCCAATGCAATCATTGTGAATTTACAACTCCAAATAAACGCTACCTGAAAACACACGAAATAAAGCATCTTCCAAGTGAATTACAAGAAAAATTTCAATGCGATCACTGTGAATATACATCTATTCGGAAAAGTCATCTAAAAAGTCACGAATTAAAGCATATTTCAAGCGAATTTCAAAAAAAGTTTCAATGCGATCAGTGTGAATACACAACTATTCGAAAAAAATATTTAAAAATACATAAATATAGAAAACATCTTCCAAGCGAATTACAGCAAGAATTTCAATGCGATCAATGTGAATTTACAACTATAGATAAAGATTCCTTAAGAAAACATAAAAAAAGACATCTTTCAAGTGAATTACAACAAAGATTTCAATGCGATCAGTGTGAATTTACAACTATTTATAAATGTAACATGACTAAACATATAAGTGGCAAACATATTTTAAATGAATTGCAATAA
Protein Sequence: MSVFSKCLRSSTVFSCNDLLESYRCRFCNYKTNEKICYFQHNCKFLDVVDEVSFKQCQHCKVGTFSLGWNYFHSRNCNYDEDLSVEVLANKTKNVTRSFKKQLNKNREKHEKRKHSSSGLQQKLQCDQCEYTTIYKHVLKTHKLKHLSKELYSQCDQCEFTTIYKHVLETHKLKHLSKELHFQCDQCEYATIYKNILKTHKLTHFYSESRQRFECDQCEYKTIYKRYLRKHISRHYGLGEFQRKHQCDECDYTTIYKCNLKLHQKKHLSRELQKRFQCDECEYTTIYKHALETHKIKHISSDVRQKFQCDECEFTTTDKNYLRTHKIKHLSNGLQEKFQCDHCEYTTIRKSNLKSHKLMHLSSEFQQKFQCDYCEYTTIRKSYLKSHKLKHISSDVRKKFQCNHCEFTTPNKRYLKTHEIKHLPSELQEKFQCDHCEYTSIRKSHLKSHELKHISSEFQKKFQCDQCEYTTIRKKYLKIHKYRKHLPSELQQEFQCDQCEFTTIDKDSLRKHKKRHLSSELQQRFQCDQCEFTTIYKCNMTKHISGKHILNELQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -