Lhir026827.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lagria hirta
Gene Symbol
-
Assembly
GCA_947359425.1
Location
OX375797.1:27345043-27346950[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0064 0.32 12.3 2.3 2 23 96 118 95 118 0.95
2 16 0.0047 0.24 12.7 6.9 1 23 127 150 127 150 0.98
3 16 0.017 0.84 10.9 3.3 1 23 159 182 159 182 0.96
4 16 0.029 1.5 10.2 4.7 1 23 191 214 191 214 0.97
5 16 0.042 2.1 9.7 3.2 1 23 254 277 254 277 0.94
6 16 0.0063 0.32 12.3 2.2 1 23 286 309 286 309 0.94
7 16 0.018 0.88 10.9 4.7 1 23 318 341 318 341 0.95
8 16 0.38 19 6.7 1.3 1 23 350 373 350 373 0.95
9 16 0.0015 0.076 14.2 4.1 1 23 382 405 382 405 0.97
10 16 0.023 1.2 10.5 4.7 1 23 414 437 414 437 0.97
11 16 0.49 25 6.3 2.4 1 23 446 469 446 469 0.95
12 16 0.18 8.8 7.7 3.3 1 23 478 501 478 501 0.94
13 16 0.0011 0.055 14.7 4.3 1 23 510 533 510 533 0.97
14 16 0.0012 0.062 14.5 3.7 1 23 542 565 542 565 0.97
15 16 0.0014 0.07 14.3 3.2 1 23 574 597 574 597 0.97
16 16 0.00069 0.035 15.3 2.8 1 23 606 629 606 629 0.97

Sequence Information

Coding Sequence
ATGTGTTTATTTATTCACAATTGTGAATCTGAAGCGTTTTGTAATGAGAATATTTTTCTACGATGTGATCGGTGTAACGTTGCTAGTTTTTCGACTGTGTGGAGATATTTCCACGAGAGAAACTGCGGTTTTCTTCAAAATCGATTAGTTGAAGCTTTCACCGATAATACGGATAATGGAAACAGTGTTACCACAGCGTATGATCAAAAAAATGAATCTATACAATTAGAAGATTTACAAATTCATGTAAAGAGAGAGGATTGCTTATCTGAATTAAAACCAATCCAATGCGATGACTGTGATTTTAAAACGACCAAAAAACGGTATTTACGACAGCATAAAAATATAAAACATCTTTCAAGCGAAATGCAACAAAGATTTCAATGTCATCAATGCGAATTTACGACTATTCATAAGAAAAGCTTAAAAACTCATATAAACACTAAACATCTTTCAAAAGAATTACAACAAAGATTTCGATGCGACCAGTGTGAATATACAACTGTTCATAAAGGTGGTCTTAAACTACACAGAAAATATAAACATCTTTTTAGTGAAGTACAACAAAAATTCCAATGCGATCAATGTGAATGCACAACTATTCATGAAAGCTACTTAAAAGCTCATAAAAAAATTAAACATTCAAGTGAATTACAACAAAGATTTCAATGCGATCAGTGTGAATATTCAACTCACATAAAAGCTATTTTTATGCAACATAAAAATAATAAACATCGTTCTCGTGCCTTACAACCGGGATTTCAATGTGATCAGTGTGAATTTACAGCTATTTATAGGAGTAGTCTGAAACGACACAGAGAACATAAACATCTTCCAAGAGAACTACAACATAGATTTCAATGCGATCAGTGTAAATATTCAGCTATTTATAGTAGCAGTCTAAAACGACACAAAGAATATAAGCACCTTCCAAGCGAACTACAACAAAGATTTCAATGCGACCAGTGTAAATTCACAACTGTGCATAACGGAGACCTAAAAAGACATAAATATAGAAAGCATCTTCCAAGTGAATTACAACAAAGATTCCAATGCGACCAGTGTGAATATACAACTACCGAAAAAGGTATTCTCAAACAACATAAAATTAAAAAACATCTCTCAAGTGATTTACAACAAAGATTTCAATGCGATCAGTGTGAATATACCACTATTCACAAAAGTGGTCTAAATCGACACAGAAAATATAAACATCTTTTGAGTGGAGTACAACAAAAATTCCAATGCGATCAGTGTGAATGCACAACTGTTCATGAAAGCTACTTAAAAGCTCATAAAAAAATTAAACATTTTTCAAGTGAATTACAACAAAGATTTCAATGCGATCAGTGTGAATATTCAACTCACATAAATGGTAGTTTAATGCAACATAAAAATAATAAACATCTTTCTCGTGAATTACAACAAGGGTTTCAATGTGATCAGTGTGAATATACTGCTGTTTATAAAAGTCGTCTAAAACAACACAGAGAACATAAACATCTTTCAAGTGAACTACAACAAAGATTTCAATGCGATCAATGTAAATATTCAACTGTTTACAACAGCCATCTGATAAGGCATAAAAATTCAAAACATCTTTCTGATGAATCACAACACAGATTTCAATGCGATCAGTGTGAATATGCTACTATTTACAAGAGCCATCTAACAAGACATAAAAATTCTAAACATCTTTCAGGCAAATTGCAACAAAGATTTGAATGCGATGAATGTGAATATTCAAGTACAGAAAAAGATAATTTAAAACATCATAAAAATAAAAAGCATCTTTCAAATGAATTACAACAAAAATTCCAATGCGATCAGTGTGAATATGAAACTACCGACAACAGAAATTTAAAAAAACATAAAAACAGAAAGCATCGTTCGACGGAATTACAATAA
Protein Sequence
MCLFIHNCESEAFCNENIFLRCDRCNVASFSTVWRYFHERNCGFLQNRLVEAFTDNTDNGNSVTTAYDQKNESIQLEDLQIHVKREDCLSELKPIQCDDCDFKTTKKRYLRQHKNIKHLSSEMQQRFQCHQCEFTTIHKKSLKTHINTKHLSKELQQRFRCDQCEYTTVHKGGLKLHRKYKHLFSEVQQKFQCDQCECTTIHESYLKAHKKIKHSSELQQRFQCDQCEYSTHIKAIFMQHKNNKHRSRALQPGFQCDQCEFTAIYRSSLKRHREHKHLPRELQHRFQCDQCKYSAIYSSSLKRHKEYKHLPSELQQRFQCDQCKFTTVHNGDLKRHKYRKHLPSELQQRFQCDQCEYTTTEKGILKQHKIKKHLSSDLQQRFQCDQCEYTTIHKSGLNRHRKYKHLLSGVQQKFQCDQCECTTVHESYLKAHKKIKHFSSELQQRFQCDQCEYSTHINGSLMQHKNNKHLSRELQQGFQCDQCEYTAVYKSRLKQHREHKHLSSELQQRFQCDQCKYSTVYNSHLIRHKNSKHLSDESQHRFQCDQCEYATIYKSHLTRHKNSKHLSGKLQQRFECDECEYSSTEKDNLKHHKNKKHLSNELQQKFQCDQCEYETTDNRNLKKHKNRKHRSTELQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-