Lhir012854.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375800.1:5056538-5058388[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.006 0.3 12.3 7.6 1 23 123 146 123 146 0.97 2 15 0.0045 0.23 12.7 2.3 1 23 155 177 155 177 0.98 3 15 0.0061 0.31 12.3 2.8 1 23 184 207 184 207 0.96 4 15 0.0075 0.38 12.0 4.3 1 23 216 239 216 239 0.97 5 15 0.0019 0.098 13.9 1.5 1 23 248 271 248 271 0.97 6 15 0.004 0.2 12.9 3.5 1 23 280 303 280 303 0.95 7 15 0.33 16 6.9 2.4 1 23 312 335 312 335 0.95 8 15 0.22 11 7.4 1.9 1 23 344 366 344 366 0.96 9 15 0.24 12 7.3 5.4 1 23 375 398 375 398 0.96 10 15 0.0037 0.18 13.0 3.3 1 23 404 427 404 427 0.96 11 15 0.00029 0.015 16.5 2.7 1 23 436 459 436 459 0.92 12 15 0.063 3.1 9.1 3.0 1 23 468 491 468 491 0.96 13 15 0.00014 0.0069 17.5 2.1 1 23 520 543 520 543 0.97 14 15 0.011 0.55 11.5 1.4 1 23 552 575 552 575 0.95 15 15 0.0034 0.17 13.1 2.0 1 23 584 607 584 607 0.96
Sequence Information
- Coding Sequence
- ATGAGTAGTTTTTTGCAAGAATTTATTTGTTTTGTTCCTCTTTTGGGCTATAAATGTCAATTCTGTAATTATGTATTGAATGAAAAAGTTTCTCAATTTAATCATAAGTGTGGATTTGGAGGTTATGATAATTTGGGGGCACCTTTTAAACGATGTAGACGTTGTAAAGTTGGCAGTTACTCGTTCGTTTGGCGGCATTATCATAAGAAGAAATGCGTCAGCTGCAAATGTTCATCAGCAGCAAAATTCTGCAAATTAAATAAATGTGATCAATGTAACTCTAAAACAGAATGTGCGTCTAACGCTACATTTTATCCGGCATATTATGAGAAAATAAATCATGCTGCTAGTGAATTGCAAACTACTTTTAACTGCAATAAGTGTGAGTATAAAACTAAGACTAAATGTTACCTATCAAGACACATGAGAAGGAAACATACTCCAATTGAATTGCAAACTGTTTTTAAGTGCAATGAGTGTGAGTATGAGTCAAAGTTCAAAGGTGACCTAACAATGCATAAAAAAAGGCATGGTCTAATTGAATTGAATTTCAGTTGCAGTGAGTGTGCGTTTAAAACTAAACGTAAAAGTTACCTAACAAAACATAAAATAATGTCTCATACTCCAGCCGAAAAGCAATTTTTTTTTAATTGCAATGAATGTGAATATAAAACTAAACTAAACTATAATTTAAGAAAGCACAAGAAAAGAAAGCATACTCCCATTGAATTGCAAGCTATATTTTACTGCAATGAATGTGAGTATCAAACTAAAGTTAAAGGAGATCTAAAAAAGCATCGGAATATTAAACATACTCCTCTTGAACTGAAAACCACTTTTAATTGCAATGAGTGTGAGTATAAAAGTAAATATAAGAGAAGTCTGAGACGGCACTTGAAAGAAAAACATACTCCAATCGAATTACAAACAATGTTTCATTGTAATGAGTGTGAGTTTGAAACTAATATTAAATACAACCTAACAATTCATAACAAAATCAAACATATTCCACTTGAATTGCTAACTATTTATACCTGCAATGAGTGTGACTTTAAAAGCAATTTTAAAGGAAAAGTAACAAATCATAAAATAAATCATATTCCACTTGAATCGCCAACAATTTTCAATTGCAAACACTGTGAGTATAAAACTAAGATTAAAGATTTTTTAACAAAACATGAGAAGATGAAGCATAAATTGCAAACAATTTTCAACTGCAATGATTGCGAGTATAAAACAAATTTTAAACGTTATCTAACAAAACATATGGCTAGGAAACATACTCCAATTGAATTGCAAATCATGTTTAGCTGCAATGAGTGTAACTATAAAACTAAAAATAAAAGTGATTTAAAAAAGCATAAGGGTATAAAACATACTCCAATTGAATTGCAAACTATTTTTAACTGCAATGAGTGTGAGTATCAAACTAACGTCAAATTTTATCTAAGAAAGCACAAGAAAATAAAGCATACTTCGATTAAATTGCAAACAAATTTAGACTACAATGAGTGTGAGTATAAAACTGAGCATATTCCGATGGAATTGCAAACTATTTATAATTGCAATGACTGTGAGTATAAAACTAGTAATAAACGTTATCTAACAATACATATGAATAGGCAACATACTCCACTTGAATTGCAAACTTTTTTTAACTGTAATGAGTGTGAGTATAAGACTAACCTTAAAGGGAATCTAACAATTCATAGGAAACTCAAACATACTCCAATCGAATTGCAAACAATTTTTAACTGCAATGAGTGTGAGTATAAAACTAAAAATACACGTTATCTAGCAAAACATATGGCAAGGAAACATACTCCAATTGAATTGCCAAAATGTTTTTAG
- Protein Sequence
- MSSFLQEFICFVPLLGYKCQFCNYVLNEKVSQFNHKCGFGGYDNLGAPFKRCRRCKVGSYSFVWRHYHKKKCVSCKCSSAAKFCKLNKCDQCNSKTECASNATFYPAYYEKINHAASELQTTFNCNKCEYKTKTKCYLSRHMRRKHTPIELQTVFKCNECEYESKFKGDLTMHKKRHGLIELNFSCSECAFKTKRKSYLTKHKIMSHTPAEKQFFFNCNECEYKTKLNYNLRKHKKRKHTPIELQAIFYCNECEYQTKVKGDLKKHRNIKHTPLELKTTFNCNECEYKSKYKRSLRRHLKEKHTPIELQTMFHCNECEFETNIKYNLTIHNKIKHIPLELLTIYTCNECDFKSNFKGKVTNHKINHIPLESPTIFNCKHCEYKTKIKDFLTKHEKMKHKLQTIFNCNDCEYKTNFKRYLTKHMARKHTPIELQIMFSCNECNYKTKNKSDLKKHKGIKHTPIELQTIFNCNECEYQTNVKFYLRKHKKIKHTSIKLQTNLDYNECEYKTEHIPMELQTIYNCNDCEYKTSNKRYLTIHMNRQHTPLELQTFFNCNECEYKTNLKGNLTIHRKLKHTPIELQTIFNCNECEYKTKNTRYLAKHMARKHTPIELPKCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -