Lhir026800.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375797.1:27204471-27206396[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.18 9.3 7.6 1.0 1 23 40 63 40 63 0.96 2 17 0.0066 0.33 12.2 4.6 1 23 70 93 70 93 0.97 3 17 0.0068 0.34 12.2 3.1 1 23 102 125 102 125 0.96 4 17 0.059 2.9 9.2 3.0 1 23 134 157 134 157 0.95 5 17 5.2 2.6e+02 3.1 3.6 1 23 166 189 166 189 0.95 6 17 0.0046 0.23 12.7 2.3 1 23 198 221 198 221 0.96 7 17 0.023 1.2 10.5 2.9 1 23 230 253 230 253 0.95 8 17 0.0046 0.23 12.7 2.3 1 23 262 285 262 285 0.96 9 17 0.05 2.5 9.4 2.2 1 23 294 317 294 317 0.95 10 17 0.0046 0.23 12.7 2.3 1 23 358 381 358 381 0.96 11 17 0.011 0.58 11.4 2.0 1 23 390 413 390 413 0.95 12 17 0.0046 0.23 12.7 2.3 1 23 422 445 422 445 0.96 13 17 0.00047 0.024 15.8 3.6 1 23 454 477 454 477 0.97 14 17 0.0046 0.23 12.7 2.3 1 23 518 541 518 541 0.96 15 17 0.0087 0.44 11.8 2.1 1 23 550 573 550 573 0.95 16 17 0.0046 0.23 12.7 2.3 1 23 582 605 582 605 0.96 17 17 0.00047 0.024 15.8 3.6 1 23 614 637 614 637 0.97
Sequence Information
- Coding Sequence
- ATGCATAAAAAAAGAAAGCATGTTATTGAAACGGAAAAATGGCTTCAACAAATTGAATGTGAATACAAAACCAGAGAAAAACGTTATTTAATAGATGATACTTGTAATAAACATATTTTTAATTGTAGTAAGTGCGCGTATAAAAGCAGCAATAAGTATTATCAAGCAGCGCATATGGCAAGTCAACATGATTTAAATGGAAATTATTTCAATTGTAGTAAGTGTGAGTATAAAACTAAACGTAAAGATTATCTATTAAATCATAAGAAAACAAAACATGCTCCAATTGAATTACAACAAGTTTTCAATTGCAATGAATGTGAATTTAGCACTAAGTTCAAACGAAGTCTTATGAGACATCTGAAATTAAAACATACTCAATGTGAACTGCAAGTTATGTTTAACTGCAATGAGTGTAAGTACAGCGCTAAAAGTAAAAATTATCTATCAATTCATAAGAAATATAAACATACTCCAATTGAATTGCAAACTTATTTCAACTGTAATGAGTGTGAGTATAAAGCTAAGTGTAAATCTCAACTAAGTCTTCATAAGAACGTAAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAATTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCAAATTGAACTGCAAGTTATGTTTAACTGCAATAAGTGTGAGTACAGCGGTAAAAGTAAAAATAATCTATCAATTCATAAGAAATATAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAGTTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCAATGTGAACTGCAAGTTATGTTTAACTGCAATGAGTGTGAGTACAGCGCTAAAAGTAAAAATTATCTATCAATTCATAAGAAATATAAACATACTCCAATTGAATTGCAAACTTATTTCAACTGTAATGAGTGTGAGTATAAAGCTAAGTGTAAATCTCAACTAAGTCTTCATAAGAACGAAAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAATTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCAAATTGAACTGCAAGTTATGTTTAACTGCAATGAGTGTGAGTACAGCGGTAAAAGTAAAAATAATCTATCAATTCATAAGAAATATAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAGTTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCCAATTGAACTGCAAGCTGTTTTTAAATGCGATGAGTGTGAGTATAAAACTAAGTATAAATTTGATCTGACAAAGCATATGAAATTGAAACATACTCCAATTGAATTGCAAGTTATGTTTAACTGCAATGAGTGTGAGTATAAAGCTAAGTGTAAATCTAAACTAAGTCTTCATAAGAACGTAAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAATTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCAAATTGAACTGCAAGTTATGTTTAACTGCAATGAGTGTGAGTACAGCGGTAAAACTAAAAATAATCTATCAATTCATAAGAAATATAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAGTTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCCAATTGAACTGCAAGCTGTTTTTAAATGCGATGAGTGTGAGTATAAAACTAAGTATAAATTTGATCTGACAAAGCATATGAAATTGAAACATTTGTACTCCAATTGA
- Protein Sequence
- MHKKRKHVIETEKWLQQIECEYKTREKRYLIDDTCNKHIFNCSKCAYKSSNKYYQAAHMASQHDLNGNYFNCSKCEYKTKRKDYLLNHKKTKHAPIELQQVFNCNECEFSTKFKRSLMRHLKLKHTQCELQVMFNCNECKYSAKSKNYLSIHKKYKHTPIELQTYFNCNECEYKAKCKSQLSLHKNVKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTQIELQVMFNCNKCEYSGKSKNNLSIHKKYKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTQCELQVMFNCNECEYSAKSKNYLSIHKKYKHTPIELQTYFNCNECEYKAKCKSQLSLHKNEKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTQIELQVMFNCNECEYSGKSKNNLSIHKKYKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTPIELQAVFKCDECEYKTKYKFDLTKHMKLKHTPIELQVMFNCNECEYKAKCKSKLSLHKNVKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTQIELQVMFNCNECEYSGKTKNNLSIHKKYKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTPIELQAVFKCDECEYKTKYKFDLTKHMKLKHLYSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -