Lhir026845.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lagria hirta
Gene Symbol
-
Assembly
GCA_947359425.1
Location
OX375797.1:27423409-27424986[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0018 0.09 14.0 4.8 1 23 12 35 12 35 0.97
2 16 0.14 7.3 8.0 2.0 1 23 44 67 44 67 0.95
3 16 0.0014 0.07 14.3 5.3 1 23 76 99 76 99 0.95
4 16 0.0018 0.092 14.0 2.3 1 23 108 131 108 131 0.97
5 16 0.0051 0.26 12.5 1.8 1 23 140 163 140 163 0.95
6 16 0.0019 0.097 13.9 2.4 1 23 172 195 172 195 0.97
7 16 0.0018 0.092 14.0 2.3 1 23 204 227 204 227 0.97
8 16 0.0011 0.053 14.7 4.2 1 23 236 259 236 259 0.96
9 16 0.0073 0.37 12.1 1.8 1 23 268 291 268 291 0.95
10 16 0.078 3.9 8.8 3.7 1 23 300 323 300 323 0.96
11 16 0.0036 0.18 13.0 2.3 1 23 332 355 332 355 0.96
12 16 0.0045 0.23 12.7 3.9 1 23 364 387 364 387 0.97
13 16 0.017 0.86 10.9 2.5 1 23 396 419 396 419 0.95
14 16 9.3 4.7e+02 2.3 3.0 1 23 428 451 428 451 0.91
15 16 0.0064 0.32 12.2 4.6 1 23 460 483 460 483 0.95
16 16 0.16 8.2 7.8 2.5 1 23 492 515 492 515 0.95

Sequence Information

Coding Sequence
ATGGCAGGAAAACATACTTTAAATGAAAATTATTTTAATTGCAATGAGTGCGAGTTTAAAACTAAACGTAAACATAATCTATTAAATCATCAGAAAGTAAAACATACTCCAATTGAACTGCAAGTTATGTTTAACTGCAATGAGTGTGAGTATAGTGCTAAAAAAATATATAATCTATCAATGCATAAGAAATATAAACATACTCCAATTGAATTGCAAACTTATTTTAACTGTACTGGGTGTGAGTATAAAACTAGGAATAAATTTCATCTGACAAAGCATATGAAATTCGAACATACTCCAATTGAATTACAACAAGTTTTCAATTGCAGTGAATGTGAGTTTAGCACTAAGTTCAAACAAAATCTTACAATTCATCAGAAAGTGAAACATACTCCAATTGAACTGCAAGCAATTTTTAAATGCGATGAGTGTGAGTATAAAGCTAAACGTAAAGATTATCTATTAAATCATAAGAAAGCAAAACATACTCCAATTGAATTGCAAACTTATTTTAATTGTAATAAGTGTGAATATAAAACTAAGTATAATTATGTTCTGACAAAGCATATGAAAATCGAACATACTCCAATTGAATTACAACAAGTTTTCAATTGCAGTGAATGTGAGTTTAGCACTAAGTTCAAACAAAATCTTACAATTCATCAGAAAGTGAAACATACTCCAATTGAACTGCAAGCAATTTTTAAATGCGATGAGTGTGAGTATAAAACTAAACTTAAAAATCATCTAACAAGACATATGAAAGCAAAACATACTCCAATTGAATTGCAAGCAATTTTTAAATGCGATGAGTGTGAGTATAAAGCTAAACGTAAAGATTATCTATTAAGTCATAAGAAAGCAAAACATACTTCAATTGAATTGCAAACTTATTTTAATTGTAATGAGTGTGAGTATAAAACTAAGTTTAAATCTAAACTAAGTTATCATAAGAACGTAAAACATACTCCAATTGAATTACAACAACTTTTCAATTGCAGTGAATGTGAATTTAGCACTAAGTTCAAAGAAAGTCTTATGAGACATCTGAAATTAAAACATACTCCAATTGAACTGCAAGCTGTTTTTAAATGCGATGAGTGTGAGTATAAAACTAAATATAAATTTGTTCTGACAAGGCATATGAAATATAAACATCCTTCAATTGAATTCCAAACAATTTTCAATTGTAATGAGTGTGACTATAAGACTCACTATAAACCTTATCTAGCAAAACATATAAAAGCAAAACATACTCCAATTGAATTGCAAACTTATTTTAACTGTAATGAGTGTGAGTATAAAGCTAAGTGTAAATCTGAACTAAGTCTTCATAAGAATGGAAAACATACTCCAATTGAATTACAACAAGTTTTCAATTGCAGTGAATGTGAGTTTAGCACTAAGTTCAAACACAATCTTACAAATCATCAGAAAGCAAAACATACTCCGATTGAATCCCAAACAATTTTCAATTGTAATGAGTGTGACTATAAGACTCACTATACACCTTATCTAGCAAAACATTTAAAAGCAAAACATACTACAGCTGAATTGCTCAAGTGCAAAGAATGA
Protein Sequence
MAGKHTLNENYFNCNECEFKTKRKHNLLNHQKVKHTPIELQVMFNCNECEYSAKKIYNLSMHKKYKHTPIELQTYFNCTGCEYKTRNKFHLTKHMKFEHTPIELQQVFNCSECEFSTKFKQNLTIHQKVKHTPIELQAIFKCDECEYKAKRKDYLLNHKKAKHTPIELQTYFNCNKCEYKTKYNYVLTKHMKIEHTPIELQQVFNCSECEFSTKFKQNLTIHQKVKHTPIELQAIFKCDECEYKTKLKNHLTRHMKAKHTPIELQAIFKCDECEYKAKRKDYLLSHKKAKHTSIELQTYFNCNECEYKTKFKSKLSYHKNVKHTPIELQQLFNCSECEFSTKFKESLMRHLKLKHTPIELQAVFKCDECEYKTKYKFVLTRHMKYKHPSIEFQTIFNCNECDYKTHYKPYLAKHIKAKHTPIELQTYFNCNECEYKAKCKSELSLHKNGKHTPIELQQVFNCSECEFSTKFKHNLTNHQKAKHTPIESQTIFNCNECDYKTHYTPYLAKHLKAKHTTAELLKCKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-