Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375803.1:13234842-13237040[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.004 0.2 12.9 1.5 1 23 115 137 115 137 0.95

2 21 0.16 8.2 7.8 3.6 1 23 144 166 144 166 0.98

3 21 0.28 14 7.1 5.9 2 23 172 193 171 193 0.96

4 21 0.00042 0.021 16.0 1.0 1 23 200 222 200 222 0.98

5 21 0.28 14 7.1 5.9 2 23 228 249 227 249 0.96

6 21 0.11 5.6 8.4 2.9 1 23 256 278 256 278 0.98

7 21 0.0022 0.11 13.7 1.7 1 23 285 307 285 307 0.99

8 21 7.2 3.6e+02 2.6 7.9 1 23 316 338 316 338 0.97

9 21 0.0023 0.11 13.7 2.0 1 23 347 369 347 369 0.98

10 21 0.03 1.5 10.1 4.4 1 23 376 398 376 398 0.98

11 21 0.016 0.8 11.0 3.8 1 23 405 427 405 427 0.97

12 21 0.00037 0.018 16.2 2.7 1 23 436 459 436 459 0.97

13 21 0.068 3.4 9.0 0.9 1 23 468 490 468 490 0.98

14 21 0.00025 0.012 16.7 2.2 1 23 497 519 497 519 0.99

15 21 0.075 3.8 8.9 4.8 1 23 528 550 528 550 0.97

16 21 0.0074 0.37 12.1 4.1 1 23 559 582 559 582 0.97

17 21 0.068 3.4 9.0 0.9 1 23 591 613 591 613 0.98

18 21 0.00042 0.021 16.0 1.1 1 23 620 642 620 642 0.98

19 21 0.019 0.96 10.7 3.4 1 23 649 671 649 671 0.98

20 21 0.0077 0.39 12.0 1.7 2 23 677 698 676 698 0.97

21 21 0.0038 0.19 13.0 3.5 1 23 707 729 707 729 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.004	0.2	12.9	1.5	1	23	115	137	115	137	0.95
2	21	0.16	8.2	7.8	3.6	1	23	144	166	144	166	0.98
3	21	0.28	14	7.1	5.9	2	23	172	193	171	193	0.96
4	21	0.00042	0.021	16.0	1.0	1	23	200	222	200	222	0.98
5	21	0.28	14	7.1	5.9	2	23	228	249	227	249	0.96
6	21	0.11	5.6	8.4	2.9	1	23	256	278	256	278	0.98
7	21	0.0022	0.11	13.7	1.7	1	23	285	307	285	307	0.99
8	21	7.2	3.6e+02	2.6	7.9	1	23	316	338	316	338	0.97
9	21	0.0023	0.11	13.7	2.0	1	23	347	369	347	369	0.98
10	21	0.03	1.5	10.1	4.4	1	23	376	398	376	398	0.98
11	21	0.016	0.8	11.0	3.8	1	23	405	427	405	427	0.97
12	21	0.00037	0.018	16.2	2.7	1	23	436	459	436	459	0.97
13	21	0.068	3.4	9.0	0.9	1	23	468	490	468	490	0.98
14	21	0.00025	0.012	16.7	2.2	1	23	497	519	497	519	0.99
15	21	0.075	3.8	8.9	4.8	1	23	528	550	528	550	0.97
16	21	0.0074	0.37	12.1	4.1	1	23	559	582	559	582	0.97
17	21	0.068	3.4	9.0	0.9	1	23	591	613	591	613	0.98
18	21	0.00042	0.021	16.0	1.1	1	23	620	642	620	642	0.98
19	21	0.019	0.96	10.7	3.4	1	23	649	671	649	671	0.98
20	21	0.0077	0.39	12.0	1.7	2	23	677	698	676	698	0.97
21	21	0.0038	0.19	13.0	3.5	1	23	707	729	707	729	0.98

Sequence Information

Coding Sequence: ATGTCCGTTTTTTCTAAATGTCTCCGTTCGTCTCCGGTTTTTTCTTGTAGTGATTTTTTGGAATCGTATAGATGCCGTTTATGCAACTTTGAAACCAATGAAAAAGTTTGTTATTTTCAACACAATTGTGAATTTGTACACGTTCTGGACGAGGCAAGTTTTAAACAATGTAAACGTTGTAAAGTTGGTAGTTTTTCGAAGGTGTGGAGGTACTTTCACAGCAAAAAGTGTAATTATGATGACAATCTAACCGTACAAGCTCCGGCGAATAAGAAAAAAGATCTTCAAAAGTTGTTTAAAAAACTAAAATACAGAAAACCTTTGCCTTCTAAATTACCAAATTTTTTATGCGATCAGTGTGAATACACAACTGTAAACAGAATAAACTTAAAAAGACATAAATTAAAGCATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGAATACACAAATATAGACAGATCCTGTTTAAACAGGCACAAATTGAGGCATCTTTCAAAAGAGTTACATTGTGATCACTGTGAATATACTACTATTTATAAAAGAACCTTGAAAAATCATAAATTAAAGCATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGAATACACAACTATAGACAGATCCGGCTTAAACAGGCACAAATTGAGGCATCTTTCAAAAGAGTTACATTGTGATCACTGTGAATATACTACTATTTATAAAAGAACCTTGAAAAATCATAAATTAAAGCATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGATTTTACTACTATTTATAAACCTGTTCTAAAACATCATAAGTTGAGGCATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGAATTTACATCAATTTATAAGGGCAGTTTAAAAACACATCAAATGAAGCATCTATCAAGTGAATTACAACCGAAATTTCACTGCGATCAGTGTGAATTCACTACTATTTATAAATGTAAATTGAAAAATCATAAATTAAAGCATCTTTCAAGGGAATTTCGGAAAAAATTTCAATGCGATCAGTGTGAATACACAACTGTAAACAGAATAACCTTAAAAAGACATAAATTAAAGCATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGAATACACAACTATAGACAGATTCTGCTTAAACAGGCATAAATTGAAGCATCTTTCGAAAGAGTTACATTACCAATGTGATCACTGTAAGTATACTACTATCTATAAAAATGATTTAGATCGTCATAAATTAAACCATCTTTCAAAGGAGTTTGGAAAAAAATTTCAATGCGACAAATGTGAATATTCAACAAATGATAAAAGCAACTTTATCAGACATTTTAATATGAAACACTTTTTGATTAAATTGCCATCTAATTTTCAATGTGATCAGTGTGATTTTACTACTATTTATAAACCTGTCCTAAAAGATCATAAGTTGAGACATCTTTCAAAAGAATTCCATTATCAATGTGATCAGTGTGAATATACATCAATTTATAAGAGCAGTTTAAAAACACATCAAATGAAGCATCTATCAAGTGAATTACAACGGAAATTTCACTGCGATCAGTGTGAATTCACTACTATTTATAAAAGTACCTTGAAAAATCATAAATTAAAGCATCTTTCAAAGGAGTTTGGAAAAAAATTTCAATGCGACAAATGTGAATATTCAACAAATGATAGAAGAAACTTTTTCAGACATTTTAATATGAAACACTTTTTGATTAAATTGCCATCTAATTTTCAATGTGATCAGTGTGATTTTACTACTATTTATAAACCTGTCCTAAAAGATCATAAGTTGAGACATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGAATACACAACTATAAAAAAACAAAACTTAGAAACACATATTTTGAAGCATCTTTCAAAAGAATTCCATTTTCAATGTGATCAGTGTGAATTCACTACTATTTATAAAAGAACCTTGAAAAATCATAAAATGAAGCATCTTTCAACAAAACTTCAATGCGATCAATGTGAATTCACAACTGTATACAACAGAAGTTTAAAAAGACATAAATTGACGCATCTTTCAAAAAATTTACGACAGAAATTCCAATGCAATCAGTGTGATTTTACAACCATAGATGAAAATCACCTTAGATTACACACAAAAAAACATTTTTCAAAGTAA
Protein Sequence: MSVFSKCLRSSPVFSCSDFLESYRCRLCNFETNEKVCYFQHNCEFVHVLDEASFKQCKRCKVGSFSKVWRYFHSKKCNYDDNLTVQAPANKKKDLQKLFKKLKYRKPLPSKLPNFLCDQCEYTTVNRINLKRHKLKHLSKEFHFQCDQCEYTNIDRSCLNRHKLRHLSKELHCDHCEYTTIYKRTLKNHKLKHLSKEFHFQCDQCEYTTIDRSGLNRHKLRHLSKELHCDHCEYTTIYKRTLKNHKLKHLSKEFHFQCDQCDFTTIYKPVLKHHKLRHLSKEFHFQCDQCEFTSIYKGSLKTHQMKHLSSELQPKFHCDQCEFTTIYKCKLKNHKLKHLSREFRKKFQCDQCEYTTVNRITLKRHKLKHLSKEFHFQCDQCEYTTIDRFCLNRHKLKHLSKELHYQCDHCKYTTIYKNDLDRHKLNHLSKEFGKKFQCDKCEYSTNDKSNFIRHFNMKHFLIKLPSNFQCDQCDFTTIYKPVLKDHKLRHLSKEFHYQCDQCEYTSIYKSSLKTHQMKHLSSELQRKFHCDQCEFTTIYKSTLKNHKLKHLSKEFGKKFQCDKCEYSTNDRRNFFRHFNMKHFLIKLPSNFQCDQCDFTTIYKPVLKDHKLRHLSKEFHFQCDQCEYTTIKKQNLETHILKHLSKEFHFQCDQCEFTTIYKRTLKNHKMKHLSTKLQCDQCEFTTVYNRSLKRHKLTHLSKNLRQKFQCNQCDFTTIDENHLRLHTKKHFSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00853095;
90% Identity: iTF_00853095;
80% Identity: -