Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375802.1:21512315-21513351[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00053 0.026 15.7 1.1 1 23 103 125 103 125 0.95

2 8 0.00082 0.041 15.1 0.5 2 23 129 149 128 149 0.94

3 8 0.00032 0.016 16.3 0.4 2 23 155 177 154 177 0.91

4 8 2.7e-05 0.0014 19.7 5.1 1 23 182 205 182 205 0.97

5 8 0.00013 0.0065 17.6 1.0 1 23 211 234 211 234 0.97

6 8 3.9e-05 0.0019 19.2 2.8 1 23 240 262 240 262 0.98

7 8 3.6e-06 0.00018 22.5 1.6 1 23 268 291 268 291 0.98

8 8 0.0014 0.072 14.3 0.5 2 21 300 319 299 320 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00053	0.026	15.7	1.1	1	23	103	125	103	125	0.95
2	8	0.00082	0.041	15.1	0.5	2	23	129	149	128	149	0.94
3	8	0.00032	0.016	16.3	0.4	2	23	155	177	154	177	0.91
4	8	2.7e-05	0.0014	19.7	5.1	1	23	182	205	182	205	0.97
5	8	0.00013	0.0065	17.6	1.0	1	23	211	234	211	234	0.97
6	8	3.9e-05	0.0019	19.2	2.8	1	23	240	262	240	262	0.98
7	8	3.6e-06	0.00018	22.5	1.6	1	23	268	291	268	291	0.98
8	8	0.0014	0.072	14.3	0.5	2	21	300	319	299	320	0.92

Sequence Information

Coding Sequence: ATGACAGAAATCCAGGAGCCACCCGTAAAAATTTGCAGGTTATGTTTGTCGAATACTGCAACTTTTACATCGATTTTGGAGAATAAAGTTGTTAGTGATATGCTCTTATCGTTAACTTCTCTTGTTATAACTTTAGAAGACGTCATTTCGACAGTAATGTGTGTGAAATGCCGACTAAATCTAAACTTAGCGTACACAATCCAGCAGAATATGATTAAGGCCGAAGAAAGATTTCATCAAAGGCAAGTACTTAAGCAGGATGCTGGTGGGGAGGCAGCGGCAGCGAAAGAAACCTTTTTTAATGGTTTCGCGTGTGAAATTTGTTCCAAAGAGTGCCCGAGCCAAGTGGAACTCAATCGACATCGGTACAACCATAAACGGAAAAAGTGTCCAATTTGTGATAAATCGGTGACAGCTTCGAATTTGCACACCCATGTAGAGGGGCATGAGTACGGCCCTCAAGTTTGTGAACTGTGTGGTGCGACTCTAAAGACGAAAAGCAATCTACGCCAGCATGTATTTTACTCACATAATGAATCGAGGCATAAATGTAATTTTTGCGACAAAGTTTTCAAGCGTAAATCATACCGAGAGGCACATCAGAAGAAGGAGCACTTGGAGGAACCGACACATGTGTGTGACACTTGTGGAAAAAAGTTCTTTGCAATCACTAATCTTAATGCCCATATTAAAATGACACATTTGAAGTTAAGGCCCTATGTCTGTGATTTTTGCAATACAAAGTTTTCGAGTAGTTTTGCTTTAAAAACTCATCGCAGGCAGCACACGAACGAGACACCGTACAAATGCGATTTTTGTGGTGAGGGATTCAGGCAAAATGTCTCTCTTAAAACACATTTGAAAAGGAAACATAATGTTGTTGGAAAGATCACCTGCCGGTGTCAGATCTGTGGAAAGGGTTTTTCTTCGACGGTTGCACTTGGGACACATAAACGGTTACAAATATGCACACCCCTCTTGTAA
Protein Sequence: MTEIQEPPVKICRLCLSNTATFTSILENKVVSDMLLSLTSLVITLEDVISTVMCVKCRLNLNLAYTIQQNMIKAEERFHQRQVLKQDAGGEAAAAKETFFNGFACEICSKECPSQVELNRHRYNHKRKKCPICDKSVTASNLHTHVEGHEYGPQVCELCGATLKTKSNLRQHVFYSHNESRHKCNFCDKVFKRKSYREAHQKKEHLEEPTHVCDTCGKKFFAITNLNAHIKMTHLKLRPYVCDFCNTKFSSSFALKTHRRQHTNETPYKCDFCGEGFRQNVSLKTHLKRKHNVVGKITCRCQICGKGFSSTVALGTHKRLQICTPLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -