Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375794.1:3032495-3040281[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.058 2.9 9.2 0.2 3 23 243 264 242 264 0.95

2 11 0.0019 0.096 13.9 0.3 1 23 354 376 354 376 0.97

3 11 0.01 0.52 11.6 0.9 1 20 380 399 380 401 0.91

4 11 0.00067 0.034 15.3 1.6 1 23 406 429 406 429 0.94

5 11 4 2e+02 3.4 4.8 1 21 433 453 433 454 0.94

6 11 0.016 0.82 11.0 6.9 1 23 464 486 464 486 0.97

7 11 0.0017 0.088 14.0 0.3 2 23 499 520 498 520 0.97

8 11 4.5e-07 2.3e-05 25.3 3.1 1 23 525 547 525 547 0.98

9 11 4.2e-05 0.0021 19.1 0.5 1 20 553 572 553 574 0.94

10 11 1.8e-05 0.00089 20.3 2.1 2 23 582 604 582 604 0.96

11 11 2.9e-05 0.0015 19.6 1.2 1 23 613 636 613 636 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.058	2.9	9.2	0.2	3	23	243	264	242	264	0.95
2	11	0.0019	0.096	13.9	0.3	1	23	354	376	354	376	0.97
3	11	0.01	0.52	11.6	0.9	1	20	380	399	380	401	0.91
4	11	0.00067	0.034	15.3	1.6	1	23	406	429	406	429	0.94
5	11	4	2e+02	3.4	4.8	1	21	433	453	433	454	0.94
6	11	0.016	0.82	11.0	6.9	1	23	464	486	464	486	0.97
7	11	0.0017	0.088	14.0	0.3	2	23	499	520	498	520	0.97
8	11	4.5e-07	2.3e-05	25.3	3.1	1	23	525	547	525	547	0.98
9	11	4.2e-05	0.0021	19.1	0.5	1	20	553	572	553	574	0.94
10	11	1.8e-05	0.00089	20.3	2.1	2	23	582	604	582	604	0.96
11	11	2.9e-05	0.0015	19.6	1.2	1	23	613	636	613	636	0.98

Sequence Information

Coding Sequence: ATGGTAGAATCTAAACTGTCTCTAGCTTCTGATAAAGCGGCGAATTTAGATTTTTGCATTCTATGTGGCGAAAAACACAATTTTGGCGAATGTAGTTTGGTTAAAATTACTAAACATATTAGTGATAATCCAGTTCTATCGAGAGCAAGACTGAGTATACCAAAAACCTTAGAAATTCAAAAATTAGTTGACGAAAGTTTTTCTGTAATCGCAAAATCGCCTATAGAGAAAGGCACGCAGTTTGGGCCTGTATATGGTGAGATTGTTGAAAAATTAGATTGCGACGATTTTTTTCCTTTGAAGTTATTTTATGTTGACGTCGATAATAATAGTAATGAGTACTTTCTAAGTCTTGCTGATGAGAATAAATCTAATTGGTTAATGTTTGTTGGCCCCGCAAATTATTCAGAAGAACAAAATTTAATTTGCTATCAGGATAAAGATAAAATATACTATGTATCCATAAAAAACATAGAGGTTGGTGATACTTTGAAAGTATGGTATTCTCCATACTATGCCACAAAAATGAATAAAACCCTATTGTCATCTGGGTTTAGTGAACAATCTGAAGATGATAATATAGATATCAGCGCTTTAATTAAGAAGCAACAGCAGATTTTGGATAGAGAAACATGGACTTGTAAGTTCTGTAGTATTATTGAGAAAAATGTAGCCGTTTTTGCCGTCCATATTCTACAACATTATTCTGCCAAGCTTGCCAAGATTTGTGAAATCTGCAAATCAGCTTTCGGGACGAGACTGCTACTGAAGAAGCATTACTCAATCGTGCACAAACCTATATTGACCGAATCTCCATCAAAACCTCATACGATTTTACAAACAACTTCTAATTTTGCTACTAAAGATATAGTTTTGGGTGGTCATCTAATAAATGATGCATTTACCGATAGCTTTGATTTGCCACAAAATGAGCTTAATCAAGTTAATCTTAATTTGGATAATCAAAGTCTACTTTTTGATAACGAAGAGAATTTAGATTTTGGAAATGTCAAAGATTTAGATCATTTTAATTTTGAAATTGACGACAATCAAAAGCATTTTGTCTGTGATATTTGTTTAAAACAATTTACAAAATTGAAATTATTGGTGGAGCATCTGAAAGCCCATACAGGAAGATTTTTATGTTCTCGATGCTTAAAGATTTTCGCTCGCAACGAGAATTTGAAATCGCATGTCTGCGCAGGAATCGCAAAATTTAGTTGCTCTACATGTGAAAAGGGCTTTGGTTCTCACAAAAATTTGCTACGCCATATATCAGCGACACATTTGAAGAACTTTCGATGCTCGAGATGCAAGCATTTATTTGGTTCGAAAACCGAACTTTCGGAACACTATTGTAAGGAAGTTTCTTCACATGAACAAGAGCTATTCACTTGTTTGCAATGCAACAAACAATTTCACCAAAGAAAATATCTAAAACGGCATTCTAAATTGCATGAAGCTAATTTAAGACCCACTAATATGAATTCCGTTGTATGTGATATATGTGGGATAACGTTGAAGGATAGAAGTTCTTATTATTTACATCGGAAGAGGCATTTTGGTCCACAGTATATGTGTGAAATTTGTGATAAAAAATTTTGTAGGCAAGATACTTTGAGCCGACATATTATGACTCATCAAACTGTTTACAATTATGAGTGTGATAATTGTGATAAAAAGTTTAAATCGCCAAGGGATTTGCAGTCGCATAAAGCTAGGAACTGTAATAATAAAGCTGCGCAGTGTTCGATATGTGAAAAGAGTTTCAAAACAGCGCACAGCTTAAAAATCCACCAAAACCAAGTTCATAATGCAGCGATAAATACAAAAAAATTTAAATGTCCAAAATGTGAGAAATCTATCAAATTAAAAAGCTCATTACTGAGACATCTTAAGACAGTACATCGAACGAACCACATTGGTAAATCAACTCAATCGCAGCAGCTAAGCCAAAAACCTGTACGCTGTAAAATGCAAGAAAATGAATTTGATGAGACTGTCACAAAACCTAAAGTAGAAGAAGAGAAATCTGATAAGGCTGTGTTCCATGAATCATATGTTCAAAAAGAACAGGAGATGTTGGATTTAATTCCTGAAATTGAATCGAAAATAGAAGAAAAATCTCTTCCAGATGCAGAGAAGAAAGATATTACCCAAGCACGGGAAATCTGCTTATCAATTCCAGATTTGACTGCAGAAGATCAAGAAATCACTTTAGGTAACAATGCATATATTTTGGAAAATGGTACAATTGTTCAACCGCAAGAAAGTTCAGACAACGTTATAATTTATGTCTTAAACCAACCGTTTACTTAA
Protein Sequence: MVESKLSLASDKAANLDFCILCGEKHNFGECSLVKITKHISDNPVLSRARLSIPKTLEIQKLVDESFSVIAKSPIEKGTQFGPVYGEIVEKLDCDDFFPLKLFYVDVDNNSNEYFLSLADENKSNWLMFVGPANYSEEQNLICYQDKDKIYYVSIKNIEVGDTLKVWYSPYYATKMNKTLLSSGFSEQSEDDNIDISALIKKQQQILDRETWTCKFCSIIEKNVAVFAVHILQHYSAKLAKICEICKSAFGTRLLLKKHYSIVHKPILTESPSKPHTILQTTSNFATKDIVLGGHLINDAFTDSFDLPQNELNQVNLNLDNQSLLFDNEENLDFGNVKDLDHFNFEIDDNQKHFVCDICLKQFTKLKLLVEHLKAHTGRFLCSRCLKIFARNENLKSHVCAGIAKFSCSTCEKGFGSHKNLLRHISATHLKNFRCSRCKHLFGSKTELSEHYCKEVSSHEQELFTCLQCNKQFHQRKYLKRHSKLHEANLRPTNMNSVVCDICGITLKDRSSYYLHRKRHFGPQYMCEICDKKFCRQDTLSRHIMTHQTVYNYECDNCDKKFKSPRDLQSHKARNCNNKAAQCSICEKSFKTAHSLKIHQNQVHNAAINTKKFKCPKCEKSIKLKSSLLRHLKTVHRTNHIGKSTQSQQLSQKPVRCKMQENEFDETVTKPKVEEEKSDKAVFHESYVQKEQEMLDLIPEIESKIEEKSLPDAEKKDITQAREICLSIPDLTAEDQEITLGNNAYILENGTIVQPQESSDNVIIYVLNQPFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -