Lhir000786.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- ZIPIC
- Assembly
- GCA_947359425.1
- Location
- OX375798.1:9125425-9128304[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.9 1.5e+02 3.9 0.4 2 23 6 27 5 27 0.93 2 15 6.8 3.4e+02 2.7 1.4 1 11 472 482 472 495 0.82 3 15 0.015 0.76 11.1 0.2 2 23 579 601 578 601 0.96 4 15 0.018 0.91 10.8 1.5 1 23 609 631 609 631 0.98 5 15 0.00027 0.014 16.6 1.3 2 23 634 655 633 655 0.97 6 15 0.0041 0.2 12.9 1.4 1 23 661 683 661 683 0.98 7 15 0.00018 0.0091 17.1 5.1 2 23 690 711 689 712 0.95 8 15 1.7 87 4.6 1.9 6 23 726 743 724 743 0.95 9 15 7.7e-05 0.0039 18.3 3.4 2 23 749 771 748 771 0.96 10 15 0.045 2.3 9.6 0.0 2 23 787 807 786 807 0.96 11 15 0.00052 0.026 15.7 0.8 1 20 813 832 813 835 0.91 12 15 0.00013 0.0066 17.6 0.4 1 23 843 865 843 865 0.99 13 15 0.0017 0.085 14.1 3.7 1 23 871 893 871 893 0.98 14 15 8.9e-06 0.00045 21.2 6.6 1 23 899 921 899 921 0.98 15 15 0.023 1.2 10.5 8.9 1 23 927 949 927 950 0.95
Sequence Information
- Coding Sequence
- ATGGATACAAACATCTCGTGCCCCGTGTGCACTCTCTATCTCCGTCCGGGTATCACTCTCAAACACCATTTGAGCACCCATCCGAAGCAGAAGGTGATTGAGGCCCTGGTGCGGCTTGCCGAAACCGATGACATCCAAAAAATCGGAGAGAGTCCATCGACACAGATCGAGTCGGGGGGCTCGACCAGTTCGCAGATTAACACAGCGATTGTAAACCACCAAAGCTGGAATCAAGGAAACTTGGTAAATATGCCTCCGAGCATTCCCCCAATACAAGGCAATCATGTATTCATATATCAGCAAAGCATGAGTAGCACGACGGCTCCACAACAAAGTTTATTAAATGTTAATCCACCGTCGCAGCAATATGTGATTCCTACTGTTTTGAATCCGCAAATGATGCCTTATATTTATCAACAGCAGGTGATAATGTCCAGCGGCTCATGTGTATCTCCAATGAGAAATTTACCTTTTGAACTACCACCAGCGACATCTACCATTGAAGAAGTTACTACATCTACAAATGACGATGAACATGAAAATGTGGAGAAAAAAGAGACTAATGAGGTAGATGATGAAGAAGATGACGAAACTATTCCACAAGAAGATCTTACCATCAAGAGTGATGGAGAGATTCAACAGCAGTTAAATAATTCATTGGAGTCTCAAGATTACGATGAAACGGAAGAAATTTGCACAGATGAATCTAATTATAAATTGGAATCTGAATTGAATAAGGCTTGTCAGACACAAACAAATAATTTATCACCTGAATCATTATTACATGAAGAAGTAATGATAGAGGATGTGGATTCGTGCAAACCGGGCTCGTCTGATTTTTACTTTGTAAACGAACGCGATAATGCCACTTATCAAAACGCTATTTATGCAGGCTCTAATGTACTACAATCATCTGATCATCTCGATTTTGTGGATATGGATGGTATGCATGTGGTCATCAACGAAATTAATGATTTCTCAAGCGGGCAAATTATATCACAGGTTGAAAATTTTGAAGGCAGTGCTCCCGATCGGCAAGGGGTTTTAATGACGATTGGGGGCATGGTTGATCATGGAAAAGAGGATTTTCTAGAGCCACGAGATGCTGAGGAAAGTATGTCTCGAGAGAGTTCAAATGTTAATATAAGAGCTGATGAAAAAATGCCACCACGTGGTGAACTATCCGGACAAGAAAGTCTTGGAGGTTCAAGTGATATTAATTGGAATCGGGTACAATACCATGAAGGTAGCTCCGGTATGTCAACTTCATACGATTTAGTAGCGAGAGAAAGTTGGGAAGCGTCTGATAGTTCCGATTTAGAAGTTCCACCACTTCAAAGTAGAAATCCACAATTTATTGATGAGGAGAACGACACACCAACTATTGTAAGTTTTACTGGACCTCCCTTAAATTTTAAATGCTCTTCTTGTGATGAAGCTTTTAGTTGTTTAAGGGAACGGAAAGAACACGAAGCTGAAAAACATCCAGAAAAGAGGAAAATTAATAGAATTGGAAGCGATTTGGGAAAGAATAAAGTGAAGAAACTTGTAATTAAATCCAAAACAGATAAACCGGAAGAGAATAATTTCGATAATATATTCACTAATAAATTAAAATTAGAAACCCTTTCCGAAGTAGAACCTGCTATAGAGGAACAGCAGCCTATGGAAGGTCTTTCTCAAGAAAATAATAATAACGAAGCAGGGACCAATTTGGTGGTTGATATAAAAACTGTATGCTCTGTCTGCGATTGCGTTGTTCCTAATGCGAAAGCATTACGTGCGCATAAATTAACTGTACATAATGTGACTTCACAGACAAGGCATAAATGTATGACCTGCGAAGAAGTCTTTCCTAATGATTATAAATTCTCTGAGCATTTACGAATTCATCCTCTCGAATGTAAACTCTGTGGACGTCTCTTTTACCGTCGACAGAACATTCAATTGCATATGCGTCGCCATTTGGGCATTAAACCCTACAAATGTGAGGTATGCCAGAAATCGTTTCTCACAAAGCAAAAGCTTGATGAGCATAGAAACGTCCATACTGGCGAGGCCCCAATTAAATGTAATCTTTGCGAGGAAACTTTTCGGCGACATTCAAATCTTGTACAACACCGCAATCGACATCATTTGAATGTTAAGAAAAAAATCAAAGATTATATTTGCTTTTGCAAAGAAATCTTTCATTCAAAGAAAAAACTCGCTTGGCATCAGGAAATCCACGCTGCGAAGCCTAAATCCTGCACACAATGCAATGAAAAATTTATTCATATGTCTAGTTTAACTCGTCATATGCGCCGGGCCCATAACGACCGTTTTCTCCCAAATGGGCACAAAAGTGCTGAGAATGTCGAGTGTCCGATATGTAAAGGAGTCTATTTAAAATCGTCCCTAGAAGTGCATATACGTAATCACAGCGGGCAGAGGCCTTATGCTTGTTTAATCTGCAATAAAGATTTCACAACCAAATGGAATTTAAAACTCCACAAATGGACACATGCGTCACGCGTGTCAAAACCATTCAAATGTGATCAATGTAAAGGGGCATTTATTCGCGAGTCGGACTACACCGCTCACATGAATTCCCACAAAAGCATTCGACCATACACATGCAACTACTGCGGTGCTCAATTTATTCGCAAATATAATTGTCAAAGACATGTAAAAGAGCATGAAAATGAGAAAATGTTTAATTGTAAAGTCTGTGGCAAATGTTTCCATCGGTCGTACTACCTTAAAGACCATATGCGAATACATAGCGGCGTTCGACCGCATTCCTGCCACATCTGCGGGAAAACTTCCACCACCAAATCGAATCATAATAAGCACGTTCAGATCCATCATGCTAGAGAACCAGTCAGTACTGAGAATTAA
- Protein Sequence
- MDTNISCPVCTLYLRPGITLKHHLSTHPKQKVIEALVRLAETDDIQKIGESPSTQIESGGSTSSQINTAIVNHQSWNQGNLVNMPPSIPPIQGNHVFIYQQSMSSTTAPQQSLLNVNPPSQQYVIPTVLNPQMMPYIYQQQVIMSSGSCVSPMRNLPFELPPATSTIEEVTTSTNDDEHENVEKKETNEVDDEEDDETIPQEDLTIKSDGEIQQQLNNSLESQDYDETEEICTDESNYKLESELNKACQTQTNNLSPESLLHEEVMIEDVDSCKPGSSDFYFVNERDNATYQNAIYAGSNVLQSSDHLDFVDMDGMHVVINEINDFSSGQIISQVENFEGSAPDRQGVLMTIGGMVDHGKEDFLEPRDAEESMSRESSNVNIRADEKMPPRGELSGQESLGGSSDINWNRVQYHEGSSGMSTSYDLVARESWEASDSSDLEVPPLQSRNPQFIDEENDTPTIVSFTGPPLNFKCSSCDEAFSCLRERKEHEAEKHPEKRKINRIGSDLGKNKVKKLVIKSKTDKPEENNFDNIFTNKLKLETLSEVEPAIEEQQPMEGLSQENNNNEAGTNLVVDIKTVCSVCDCVVPNAKALRAHKLTVHNVTSQTRHKCMTCEEVFPNDYKFSEHLRIHPLECKLCGRLFYRRQNIQLHMRRHLGIKPYKCEVCQKSFLTKQKLDEHRNVHTGEAPIKCNLCEETFRRHSNLVQHRNRHHLNVKKKIKDYICFCKEIFHSKKKLAWHQEIHAAKPKSCTQCNEKFIHMSSLTRHMRRAHNDRFLPNGHKSAENVECPICKGVYLKSSLEVHIRNHSGQRPYACLICNKDFTTKWNLKLHKWTHASRVSKPFKCDQCKGAFIRESDYTAHMNSHKSIRPYTCNYCGAQFIRKYNCQRHVKEHENEKMFNCKVCGKCFHRSYYLKDHMRIHSGVRPHSCHICGKTSTTKSNHNKHVQIHHAREPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -