Lhir028224.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375802.1:12422499-12424396[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00071 0.036 15.3 4.8 1 23 109 131 109 131 0.98 2 11 0.0012 0.06 14.5 11.5 1 23 137 159 137 159 0.96 3 11 0.00064 0.032 15.4 6.1 1 23 165 187 165 187 0.98 4 11 0.00025 0.012 16.7 1.7 1 23 193 215 193 215 0.95 5 11 1.5e-05 0.00074 20.5 0.8 1 23 221 243 221 243 0.96 6 11 1e-05 0.00053 21.0 0.3 1 23 249 271 249 271 0.96 7 11 0.0046 0.23 12.7 4.2 1 21 276 296 276 298 0.94 8 11 0.009 0.45 11.8 0.5 3 23 306 327 305 327 0.96 9 11 0.0022 0.11 13.7 0.5 3 23 338 358 336 358 0.96 10 11 0.0035 0.17 13.1 5.0 1 23 395 417 395 417 0.98 11 11 0.0002 0.01 17.0 4.4 1 23 427 449 427 449 0.96
Sequence Information
- Coding Sequence
- ATGTGTGCGGCCGCCAATTTAACAGCCTTTGCATATTGGCCGGCTGTTGAGCCCCATATTTCCGATACAACCATTCAAAATTATTCCGCAGCGAGTTTTGTGTCAGACAGCCCTAAAAATAAGCTTTTCAGGCAGTCAATGTTATTTTTCAACAACATCCCTAAACAAGATTTTTTTCCTGTGTCTGACAAAGGCCGAGAAGTAGAAAATAAACACTTTTTAACATCATTGACAGCAGCTCCGTTGCCCGGGGAACATATTGCCAAAAAAGAAGAGATTCTTGATATAGGTCTGAGAAAGGATTCCTCAGAGAAGGCGCGCCCGTACTTCtgtgatgaatgtgggaaatcgtttttattaaagcaccatttaacgactcatgctcgaacgcatacaggaattcgtcctcatatttgttctcattgtggaaagagttttacgcataagcactgcttgaatactcatttattgctccactctagtgagaggccttttcagtgtatggaatgtaaaaagagtttcactctcaaacaccatttaataacgcacagcaaagtgcacagtcgagacaagccatttatttgtaatgaatgtggtcaagcatttcctgtaaagcggcacttaacaactcacagcaagtttcatgctggagaaaggccttttatttgtgaagaatgtggagaatcttttgcccaaaaagatcatttGGTAATGCACTCTCGTTTTCATGGCTCTCTGAACTCTTTCGCTTGCAACGATTGTGGTGCTACCTTCACAAGAAAATTTGAACTAGTCAATCATGGTCGTCTCCATGGAAAACAGCCACATAACTGTGTTATCTGTAACAAAGAGTTTTTTCAAAAACGTACTTTGGTGGCACATATGCGTTGCCACACTGGAAACTATCAAAACTCTTGTTCAAGTTGCGGCGAAACCTTTCAGCTGAGACAAGATTTAGCATCGCATGTCAAAACGCAACATACAAATAGTCAATCTCATACAAAACAAATCTGTCAAGACTGTGGCTGTTTATTTAATACTTCTGAAGCGTTGGCTTTACATCTTAAGCTTCATTCCGGTGATTCGTCCTTAGTAAATGACCTTTGTGTGTTAACGACTGGTTTAAATAACACCAATTTTTCATTAAATTTACAAACTGCCGCTACAAGTAAATCAAAAAACTTTGTCTGTCAACATTGTTCAAAGGGTTATAGTGCTAAACATGGATTACAACAACATACGAAGAAGCATCCCGACGGCACCTGTGCTTTAAGATCTCATATTTGCAATGTATGCGACAAAGGGTTCTTCCAAAAAAATCATTTGTTATTGCATCAACGGCAGCATATGAATCCAAATGATAGGAATAAAAGCACCGATATTAAATTATTAGACAATTGTACAGAAGATTGTAAGAATAATCTGTGA
- Protein Sequence
- MCAAANLTAFAYWPAVEPHISDTTIQNYSAASFVSDSPKNKLFRQSMLFFNNIPKQDFFPVSDKGREVENKHFLTSLTAAPLPGEHIAKKEEILDIGLRKDSSEKARPYFCDECGKSFLLKHHLTTHARTHTGIRPHICSHCGKSFTHKHCLNTHLLLHSSERPFQCMECKKSFTLKHHLITHSKVHSRDKPFICNECGQAFPVKRHLTTHSKFHAGERPFICEECGESFAQKDHLVMHSRFHGSLNSFACNDCGATFTRKFELVNHGRLHGKQPHNCVICNKEFFQKRTLVAHMRCHTGNYQNSCSSCGETFQLRQDLASHVKTQHTNSQSHTKQICQDCGCLFNTSEALALHLKLHSGDSSLVNDLCVLTTGLNNTNFSLNLQTAATSKSKNFVCQHCSKGYSAKHGLQQHTKKHPDGTCALRSHICNVCDKGFFQKNHLLLHQRQHMNPNDRNKSTDIKLLDNCTEDCKNNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -