Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375800.1:24099250-24102805[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00011 0.0057 17.8 1.9 1 23 26 48 26 48 0.99

2 16 0.019 0.95 10.8 6.4 1 23 53 76 53 76 0.95

3 16 0.0054 0.27 12.5 0.4 3 23 112 133 111 133 0.97

4 16 0.11 5.7 8.3 3.6 1 23 138 160 138 160 0.84

5 16 0.00019 0.0093 17.1 0.7 2 23 168 189 167 189 0.97

6 16 8.1e-05 0.0041 18.2 3.5 3 23 198 218 197 218 0.97

7 16 3.2e-06 0.00016 22.6 4.1 1 23 224 246 224 246 0.99

8 16 1.4e-05 0.00068 20.7 0.4 1 23 252 274 252 274 0.93

9 16 0.039 2 9.8 2.4 1 20 280 299 280 301 0.94

10 16 0.026 1.3 10.3 0.7 1 23 361 383 361 383 0.95

11 16 0.11 5.4 8.4 0.3 3 23 410 431 408 431 0.96

12 16 0.03 1.5 10.1 0.1 2 23 438 460 437 460 0.93

13 16 8.8 4.4e+02 2.4 1.0 5 23 485 503 484 503 0.92

14 16 0.17 8.4 7.8 0.5 2 23 510 528 510 528 0.93

15 16 0.00083 0.042 15.0 0.6 1 23 534 556 534 556 0.95

16 16 0.0001 0.0053 17.9 1.0 2 23 564 585 563 585 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00011	0.0057	17.8	1.9	1	23	26	48	26	48	0.99
2	16	0.019	0.95	10.8	6.4	1	23	53	76	53	76	0.95
3	16	0.0054	0.27	12.5	0.4	3	23	112	133	111	133	0.97
4	16	0.11	5.7	8.3	3.6	1	23	138	160	138	160	0.84
5	16	0.00019	0.0093	17.1	0.7	2	23	168	189	167	189	0.97
6	16	8.1e-05	0.0041	18.2	3.5	3	23	198	218	197	218	0.97
7	16	3.2e-06	0.00016	22.6	4.1	1	23	224	246	224	246	0.99
8	16	1.4e-05	0.00068	20.7	0.4	1	23	252	274	252	274	0.93
9	16	0.039	2	9.8	2.4	1	20	280	299	280	301	0.94
10	16	0.026	1.3	10.3	0.7	1	23	361	383	361	383	0.95
11	16	0.11	5.4	8.4	0.3	3	23	410	431	408	431	0.96
12	16	0.03	1.5	10.1	0.1	2	23	438	460	437	460	0.93
13	16	8.8	4.4e+02	2.4	1.0	5	23	485	503	484	503	0.92
14	16	0.17	8.4	7.8	0.5	2	23	510	528	510	528	0.93
15	16	0.00083	0.042	15.0	0.6	1	23	534	556	534	556	0.95
16	16	0.0001	0.0053	17.9	1.0	2	23	564	585	563	585	0.97

Sequence Information

Coding Sequence: ATGCATTCTTCTTGCAGATGCGCAAATGTTTGGGTTTCGGACATCGAAAAATCGGTAGTTTCAACAAGTCCTCCTTTTCAATGTACGATTTGTAATAAAGTCTTGAAGACGAGAGTTACCTTGAAAGGGCACTACAAGCGTCATCGGGAGCCCCAGCATAGCTGCTCCAGCTGTGACAAGACATTCTACACCATGTTTGAATTAAAACATCACACGGAAAGGTACCACGACATGAAAATGTTTTCCTGCGCGTACTGCAAATATGAAAATGCGAAAGAAGTCAAAGTGAAAACTCACACTGTGAAGCATCATACAAAAAACTTCTCAGTTTTTTGCAATATTTGCAAAGTTGGCTTCAATTACAATTGGGAGTTGAGGGAGCACACACAAATGCAGCACGAAGGCGTCGTGTACTACTGCAAATTATGTCCACGGACCTTTAAGCGAAAGCAGATTCTGATGTGCCATCAAAGTGTCCATcagacggataaaaaacctctaaaatgcgaagtatgtcagcaggtctatatgtcaactgggggctttcgccgccatatgcgcacccatacccaggaacatatcaggcccatttgtgagctttgtggcagatcttgttcttcgaaagatcatcttcgtcttcatctcaaaatccatgctggcatcaaagatttcacttgccaattttgcagcaaggctttcaccactcactccgatttgaagctacacattcgcactcatacgaaagaaaagccttatctgtgcaacgagtgcggaaaagcctttacccaaaaaggcagccttagattacattcactgttacattcgggggaaagacctttcaagtgcaaaggctgcgtcagaacctttctcacgacatcacaGCTCAAGGCTCACAAATGCCTAGGTGATAAGAAAGATCAAGAAGTCGAATTTCCATATATACGTGTTGTTGATCTTGAAGTTCTTAGAGGCGGTTTAAGTATTGATAAGCCGAATGTAAGGCAGAATGGTAAGCACCATAAATGTGATGAGACCGAGAAGTATTTGGGAGGAGATCATGAACGAGGCAAAATAGGGTATTATAAGTGTATCACTTGTTTTGAGGTTTTCCAAACAAGTGCTGATTTGCAGCACCATCTGGCAGGTCACCAACACATTAAGGTCAACCATTGGGACAATAAATTCGATTTTGGTGCTGTCTCACTTGAGAACTCCGACACTTTTGGCTGTGTTTTTTGCGGTTACTTAGTTTCTACACGTCAACTTCTTGAAAAGCACGTCAATAGGCAGCACCCCCAAAAAACACCGATCAGCTGTACAATTTGCAACATGAGTTTTGCTTTAGATTCAGAATTTGTGGCACATGCACGAGCAAAACATAAAAATTGTGATAACAAATTTAATCCAAAACCGTCATTGGAAGATCCTCATAAGACAAGTTTCAAATTCAACATTTGTGCTAAGAATTTTGACGGAAAGAAGGCTTTTCACAACCACACGCTTTTCCATGGTGAGGAAAAGAAGCCAGTTTGTGAACTGTGCGACAAAAGTGTTAACAATCTCAAAGAACATATTAAGACGCACTTTGGGGAAAAGGAGCACGCCTGCGAGCTCTGTGGTCAGCAATTTTATTCCACGGATGAGCTCAAATTGCACATTTATGTTCACACCAAGGAGAAGACACTCCTCAAGTGTCCTCAGTGCGACAAGTCATTTTTGCTTCGAGGGTTGCTGCGAAAGCACATGAAATCGCATGTGAGAAAATAA
Protein Sequence: MHSSCRCANVWVSDIEKSVVSTSPPFQCTICNKVLKTRVTLKGHYKRHREPQHSCSSCDKTFYTMFELKHHTERYHDMKMFSCAYCKYENAKEVKVKTHTVKHHTKNFSVFCNICKVGFNYNWELREHTQMQHEGVVYYCKLCPRTFKRKQILMCHQSVHQTDKKPLKCEVCQQVYMSTGGFRRHMRTHTQEHIRPICELCGRSCSSKDHLRLHLKIHAGIKDFTCQFCSKAFTTHSDLKLHIRTHTKEKPYLCNECGKAFTQKGSLRLHSLLHSGERPFKCKGCVRTFLTTSQLKAHKCLGDKKDQEVEFPYIRVVDLEVLRGGLSIDKPNVRQNGKHHKCDETEKYLGGDHERGKIGYYKCITCFEVFQTSADLQHHLAGHQHIKVNHWDNKFDFGAVSLENSDTFGCVFCGYLVSTRQLLEKHVNRQHPQKTPISCTICNMSFALDSEFVAHARAKHKNCDNKFNPKPSLEDPHKTSFKFNICAKNFDGKKAFHNHTLFHGEEKKPVCELCDKSVNNLKEHIKTHFGEKEHACELCGQQFYSTDELKLHIYVHTKEKTLLKCPQCDKSFLLRGLLRKHMKSHVRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -