Lhir010365.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375801.1:22745324-22748470[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 0.26 13 7.2 2.3 2 23 94 116 93 116 0.94 2 30 0.0048 0.24 12.6 0.8 1 23 125 148 125 148 0.95 3 30 2.3 1.2e+02 4.2 0.5 1 23 157 180 157 180 0.94 4 30 0.16 8.2 7.8 1.1 1 23 190 213 190 213 0.97 5 30 0.077 3.9 8.9 4.2 2 23 223 244 222 245 0.94 6 30 0.0049 0.25 12.6 1.0 1 23 254 277 254 277 0.95 7 30 0.016 0.81 11.0 3.5 1 23 286 309 286 309 0.96 8 30 0.016 0.81 11.0 3.5 1 23 318 341 318 341 0.96 9 30 0.016 0.81 11.0 3.5 1 23 350 373 350 373 0.96 10 30 0.02 1 10.7 2.6 1 23 382 405 382 405 0.96 11 30 0.014 0.72 11.1 1.0 1 23 414 437 414 437 0.95 12 30 0.016 0.81 11.0 3.5 1 23 446 469 446 469 0.96 13 30 0.016 0.81 11.0 3.5 1 23 478 501 478 501 0.96 14 30 0.046 2.3 9.6 3.7 1 23 510 533 510 533 0.96 15 30 0.014 0.72 11.1 1.0 1 23 542 565 542 565 0.95 16 30 0.0023 0.11 13.7 2.3 1 23 574 597 574 597 0.95 17 30 0.094 4.7 8.6 6.8 1 23 602 625 602 625 0.98 18 30 0.0058 0.29 12.4 2.5 1 23 634 657 634 657 0.96 19 30 0.028 1.4 10.2 1.7 1 23 666 689 666 689 0.94 20 30 0.0056 0.28 12.4 2.0 1 23 698 721 698 721 0.96 21 30 0.094 4.7 8.6 6.8 1 23 730 753 730 753 0.98 22 30 0.056 2.8 9.3 2.7 2 23 766 788 765 788 0.90 23 30 0.0058 0.29 12.4 2.5 1 23 797 820 797 820 0.96 24 30 0.054 2.7 9.3 1.5 1 23 829 852 829 852 0.92 25 30 0.016 0.81 11.0 3.5 1 23 861 884 861 884 0.96 26 30 0.0047 0.23 12.7 0.8 1 23 893 916 893 916 0.95 27 30 0.0095 0.48 11.7 4.5 1 23 925 948 925 948 0.98 28 30 0.0058 0.29 12.4 2.5 1 23 957 980 957 980 0.96 29 30 0.021 1 10.6 5.7 1 23 989 1012 989 1012 0.96 30 30 0.024 1.2 10.4 3.7 1 23 1021 1044 1021 1044 0.96
Sequence Information
- Coding Sequence
- ATGAGTGACTATTTGCAGACATTTATGTGTTACTCTTCTCTTCTGGCGTATCAATGTAAATCTTGCAATTTTGCTACAAATGAAAAAGTTCAAAAATTTAATCATAATTGCAAATTTGGAGGTTATGACACTTTCAAGGTAGCTTTTAAACGATGTAGACGATGCAAAGTGGGTAGTTACTCGTTTGTTTGGCGTTATTATCATAAAATAAAATGTGCCAATACCAATAATAATTTGTTAGTAAAAAAATTCAAAAATTATTCATTAGACAAACTACTTGAATGTGATCAGTGTAACTATAAAACTCACCAGAGCCGTGATTTAAAATTACATAAGATAAGAGAGCATGTGTCTATCGAACCGGAAAAATGGTTCAAATGTGATGATTGTGATTACAGAACTAAACTTGAGAGTAGTTTAATTGTACATAAAAAAGAGAATCACATTCTATTTGATTTATCTAAAGTTTTCAACTGCAACGAGTGTGAGTCCAAAACTAATTATCTAGGCTCCTTAGTAATCCATAATAAAATAAAACATGATGAAAATGAATTGCAAGCAACTGTTTTTGTCTGCCGTAAGTGTGGGTTTCAGACTGAGTTGATCTCTAATCTAATAAACCATAAGAAAAAAAGCCATACGCTTGTTGAATTGCAAACATATCTTAAATGCAGCGAATGTAACTTTAAAACAAAGTATAAACGCTATCTAACAGAGCATGAGAAAATACACCATACTCAAATTGAATTGGAAGCAGTTTTCAATTGCAATGAGTGTGAGTATGAAACTCCCTCTCAAGGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGATTTGCTAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGAGTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGATTTGCAAACATTTTTTAAGTGCAATGAGTGTGAGTTTAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAATACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATGAAACTCCCTCTCAAGGATATCTATCAAATCATAAGAAAGAAAAACATGGCTTAACTGATTTGCTAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGAGTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGATTTGCAAACATTTTTTAAGTGCAATGAGTGTGAGTTTAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATGAAACTCCCTCTCAAGGATATCTATCAAATCATAAGAAAGAAAAACATGGCTTAACTGATTTGCTAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAATCAAATCTATCAAGGCATAAGAAAGCAAAACATGGCTTAACAATTTTTAAGTGCAAAGAGTGTGAGTATGAGACCAGTTTTAAATGTTATCTAAGACAGCATACAAAAACGAAACATACTCCAATTGATTTCCAAAAAAATTTCAATTGCGATGAGTGTGATTTCAAAACTGGATTTAAAAGTAATCTAAACAAGCATAAGAAGATAAAACATACTTCAATTGAATTGCAAACAATTTTTGCCTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAAGAAAAACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAGGAAATCTATCAAGGCATAAGAAAGAAAAACATGGCTTAACTGATTTGCGAACAATTTTTAAGTGCAAAGAGTGTGAGTATGAGACCAGTTTTAAATGTTATCTAAGACAGCATACAAAAACGAAACATACTCCAACCGATCTGCAAACTATTGATAAGTATATTCCCTGCAATGAGTGTGGGTATAAAACTAGATTTAAATTTCATATGAAAAGGCATAAAGAAGCTAAACATACTCCAATTGATTTCCAAAAAAATTTCAATTGCGATGAGTGTGATTTCAAAACTGGATTTAAAAGTAATCTAAACAAGCATAAGAAGATAAAACATACTTCAATTGAATTGCAAACAATTTTTGCCTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGGAACAAAAACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATAAAACTCCCTTTCAAAGAAATCTATCAAGGCATAAGAAACAAAAACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAATGAGTGTGAGTATGAAACTCCCTCTCAAGGAAATCTATCAAGTCATAAGAAAGAAAAACATGGCTTAACTGATTTGCAAACAATTTTTAAGTGCAAAGAGTGTGAGTATGAGACCAGTTTTAAACGTTATCTAAGACAGCATACAAAAACGAAACATACTCCAATTGATTTCCAAAAAAATTTCAATTGCGATGAGTGTGATTTCAAAACTGGATTTAAAAGTAATCTAAACAAGCATAAGAAGATAAAACATACTTCAATTGAATTGCAAACAATTTTCAATTGCAATGAGTGTGAGTTTAAAACTTACGATAAATATCATCTAAAACGACATAAAAAAATAAAACATACTCCAATTGAATTGCAAACAATTTTCAACTGCAATGAGTGTGAGTATAAAACCATGTATAAATCTAATTATACAAGACATAAGAAAATAAAGCATACTCTAATTGAATAG
- Protein Sequence
- MSDYLQTFMCYSSLLAYQCKSCNFATNEKVQKFNHNCKFGGYDTFKVAFKRCRRCKVGSYSFVWRYYHKIKCANTNNNLLVKKFKNYSLDKLLECDQCNYKTHQSRDLKLHKIREHVSIEPEKWFKCDDCDYRTKLESSLIVHKKENHILFDLSKVFNCNECESKTNYLGSLVIHNKIKHDENELQATVFVCRKCGFQTELISNLINHKKKSHTLVELQTYLKCSECNFKTKYKRYLTEHEKIHHTQIELEAVFNCNECEYETPSQGNLSRHKKQKHGLTDLLTIFKCNECEYKTPFQRNLSRHKKQKHGLTDLQTIFKCNECEYKTPFQRNLSRHKKQKHGLTELQTIFKCNECEYKTPFQRNLSRHKKQKHGLTDLQTFFKCNECEFKTPFQRNLSRHKKQIHGLTDLQTIFKCNECEYETPSQGYLSNHKKEKHGLTDLLTIFKCNECEYKTPFQRNLSRHKKQKHGLTELQTIFKCNECEYKTPFQRNLSRHKKQKHGLTDLQTFFKCNECEFKTPFQRNLSRHKKQKHGLTDLQTIFKCNECEYETPSQGYLSNHKKEKHGLTDLLTIFKCNECEYKTPFQSNLSRHKKAKHGLTIFKCKECEYETSFKCYLRQHTKTKHTPIDFQKNFNCDECDFKTGFKSNLNKHKKIKHTSIELQTIFACNECEYKTPFQRNLSRHKKEKHGLTDLQTIFKCNECEYKTPFQGNLSRHKKEKHGLTDLRTIFKCKECEYETSFKCYLRQHTKTKHTPTDLQTIDKYIPCNECGYKTRFKFHMKRHKEAKHTPIDFQKNFNCDECDFKTGFKSNLNKHKKIKHTSIELQTIFACNECEYKTPFQRNLSRHKEQKHGLTDLQTIFKCNECEYKTPFQRNLSRHKKQKHGLTDLQTIFKCNECEYETPSQGNLSSHKKEKHGLTDLQTIFKCKECEYETSFKRYLRQHTKTKHTPIDFQKNFNCDECDFKTGFKSNLNKHKKIKHTSIELQTIFNCNECEFKTYDKYHLKRHKKIKHTPIELQTIFNCNECEYKTMYKSNYTRHKKIKHTLIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -