Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375803.1:16023617-16030187[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1 54 5.2 0.9 2 14 161 173 160 180 0.90

2 10 0.0025 0.13 13.5 0.3 1 23 189 212 189 212 0.97

3 10 2.7e-06 0.00013 22.9 0.6 1 23 218 240 218 240 0.96

4 10 4.1e-08 2.1e-06 28.6 2.3 1 23 246 268 246 268 0.99

5 10 9.6e-06 0.00048 21.1 0.4 1 23 274 296 274 296 0.95

6 10 0.00081 0.041 15.1 3.3 1 23 302 324 302 324 0.97

7 10 4.6e-05 0.0023 19.0 1.1 1 23 428 450 428 450 0.97

8 10 7e-05 0.0035 18.4 2.2 1 23 456 478 456 478 0.97

9 10 1.1e-06 5.3e-05 24.2 2.0 1 23 484 506 484 506 0.99

10 10 0.00055 0.028 15.6 2.2 1 23 512 534 512 534 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1	54	5.2	0.9	2	14	161	173	160	180	0.90
2	10	0.0025	0.13	13.5	0.3	1	23	189	212	189	212	0.97
3	10	2.7e-06	0.00013	22.9	0.6	1	23	218	240	218	240	0.96
4	10	4.1e-08	2.1e-06	28.6	2.3	1	23	246	268	246	268	0.99
5	10	9.6e-06	0.00048	21.1	0.4	1	23	274	296	274	296	0.95
6	10	0.00081	0.041	15.1	3.3	1	23	302	324	302	324	0.97
7	10	4.6e-05	0.0023	19.0	1.1	1	23	428	450	428	450	0.97
8	10	7e-05	0.0035	18.4	2.2	1	23	456	478	456	478	0.97
9	10	1.1e-06	5.3e-05	24.2	2.0	1	23	484	506	484	506	0.99
10	10	0.00055	0.028	15.6	2.2	1	23	512	534	512	534	0.97

Sequence Information

Coding Sequence: ATGAATACCACCTACGAACCTTGGAGGAGTTACGCAACCATATGTCGTCTGTGCTTACAGAAAGATGGATTTATGATTGGCATTTTCAATTCTATCCAAGGGGATGATAAAAGCATTTATAAGAAAATTATTGATTGTACGGCTTTAAAGATTTCTCACAGTGATGGTTTGCCCAACGTGATCTGTCATCGGTGCCTCTTTAAAATTGAGTTTTGCTTGGAGTTCCGCAAATTATGCTTTATATCAGATGCAACACTTCGTCAATTGAACGCAGCTCTTACTACCGAAACAGATCCAGAGGCTCCAGCACCCCCTCAACTTCCCTATCTTGAGCAATTAGCAAATGGAAATGAAGAAGATGTAGTAATGGTTGTAGATCCAACGGCACTAGATTATGAGTCTGAAGGTGAAAGTGAAAATGCGGCAAGTGATAATGAGAATGCAGAACCAAGCGATAATTATGGTGGAAAAAATGTGTCGATGTGTCGTTATTGCGATCATGCTTTTACCGATAAAACCGAATGTGGAGAACATGAGGTAAATGCACATAATTCCGATGTACCTTATTCGTGTAGTCTATGCGATATGCAATTTGCTGATAGATTGCAGTATTCAGCACATCTGAAAAGTGTACACCAAAATGATAAACCTTATAATTGTCCTCAATGTGAGCGAACTTTTGCTAGAAGATCTGACTTACGTAAACATACCGTAGTTcatacaggcattaaaccatacacatgtagtgtatgctcaaaatcattttctagaaacacaaatttatcaaaacatatgagaattcattcaggtcaaaagccttatgtgtgCTCCAAGTGTCCTAAAACATTTTTCTCAAAAGGGGATCTTACTCGACATGCTGTTATTCACTCGGATCAAAAGCCATTCCATTGCAATTTTTGCAATTTGGCATTTGGAAGAAAAGATAAATTAATAAGGCATGAGAAGCGACATTTTCCACAAGAAAACTCGGAAGATAAGTCACAAGAATTACAAATGATGCGAAATAATCTTGGGGATTATTATCCACTAAAAACTGAAAATGCTGACGAGACCTTTGACAATGAGGAAAATATGGTGATCAGTGTTGATCCGTTTAATCATAGCGACTCCATCATTAAAGCAGAAATCACTTCAGAATTAGATTTGAAGGGCGAAACTGGTGAACTACCTGAGCGTTTAGATGCTACCTTAGAGCCTGAGGTGGTGCCACAAATTCCTGCACACATTACAGGTGATTGTTTCGATGAGAGTACAAAGCGTTACGCGTGTGATTCTTGTCCAAAGACTTTTTCGAATCCGGAAAATATGCGATACCATCATGCTACCCATTCGGGAGTTAGACCTCACGTGTGTAGCATTTGCTCAAAATCTTTCATACGAAAAAGAGAATTAGATCGACATTTTGCGACGCACACTGGAATGAAACCGTTTAAATGTGTCAAGTGTTCGAAAAGCTTTGGGCGAAAAGATAAGCTTGTGAGACATATGAGGATTCACGATGTGAATAAAGAGCACTCTTGTAAGGTTTGCTTCGCTACATTCAATCGTAGAGATGGATTGCTACAGCATGTAAAGACACATGTCAAAGGTGATCCGCTCTAG
Protein Sequence: MNTTYEPWRSYATICRLCLQKDGFMIGIFNSIQGDDKSIYKKIIDCTALKISHSDGLPNVICHRCLFKIEFCLEFRKLCFISDATLRQLNAALTTETDPEAPAPPQLPYLEQLANGNEEDVVMVVDPTALDYESEGESENAASDNENAEPSDNYGGKNVSMCRYCDHAFTDKTECGEHEVNAHNSDVPYSCSLCDMQFADRLQYSAHLKSVHQNDKPYNCPQCERTFARRSDLRKHTVVHTGIKPYTCSVCSKSFSRNTNLSKHMRIHSGQKPYVCSKCPKTFFSKGDLTRHAVIHSDQKPFHCNFCNLAFGRKDKLIRHEKRHFPQENSEDKSQELQMMRNNLGDYYPLKTENADETFDNEENMVISVDPFNHSDSIIKAEITSELDLKGETGELPERLDATLEPEVVPQIPAHITGDCFDESTKRYACDSCPKTFSNPENMRYHHATHSGVRPHVCSICSKSFIRKRELDRHFATHTGMKPFKCVKCSKSFGRKDKLVRHMRIHDVNKEHSCKVCFATFNRRDGLLQHVKTHVKGDPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -