Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375801.1:20199166-20202014[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0018 0.091 14.0 0.0 2 21 203 222 202 223 0.95

2 10 0.0026 0.13 13.5 1.0 1 23 236 258 236 258 0.98

3 10 0.00011 0.0054 17.8 0.6 3 23 297 318 295 318 0.90

4 10 0.85 43 5.6 0.1 1 19 375 393 375 396 0.78

5 10 6.2e-05 0.0031 18.6 4.3 3 23 424 444 422 444 0.97

6 10 1.2e-05 0.00059 20.8 0.8 1 23 450 472 450 472 0.98

7 10 1.7e-05 0.00083 20.4 0.5 1 23 478 501 478 501 0.92

8 10 1.9e-07 9.3e-06 26.5 0.7 1 23 507 529 507 529 0.99

9 10 1.1e-06 5.3e-05 24.1 2.0 1 23 535 557 535 557 0.99

10 10 9.6e-07 4.8e-05 24.3 2.3 1 23 563 585 563 585 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0018	0.091	14.0	0.0	2	21	203	222	202	223	0.95
2	10	0.0026	0.13	13.5	1.0	1	23	236	258	236	258	0.98
3	10	0.00011	0.0054	17.8	0.6	3	23	297	318	295	318	0.90
4	10	0.85	43	5.6	0.1	1	19	375	393	375	396	0.78
5	10	6.2e-05	0.0031	18.6	4.3	3	23	424	444	422	444	0.97
6	10	1.2e-05	0.00059	20.8	0.8	1	23	450	472	450	472	0.98
7	10	1.7e-05	0.00083	20.4	0.5	1	23	478	501	478	501	0.92
8	10	1.9e-07	9.3e-06	26.5	0.7	1	23	507	529	507	529	0.99
9	10	1.1e-06	5.3e-05	24.1	2.0	1	23	535	557	535	557	0.99
10	10	9.6e-07	4.8e-05	24.3	2.3	1	23	563	585	563	585	0.98

Sequence Information

Coding Sequence: ATGGAGAATTCAGAAACGAATGGGGAAATATTACAAAATGTTGTGATCAGTGAAGGTGCTGCTGGGGCTGAATATATGATTCAACGACTGCCAGAAAGTTCGCCATTATTAGAATCGGAGTTATTGGAGCATCACAATGGGCTTGTAGTCGATCTCGCAGAAACTGATTTTATCCCGGTTCCGTACAATTCGGAAACTTTGTTAACTCACGATTTAACTGAAGAGGATCGTAATTTAGCAGCCGCTTTGGTAGCTGTGCAGTTTAGCCAACACCAAAAGCAACAGCACGTACAGGAAACCAATCTTCAGTCTCTAGTGCAAAATACAGCAATCGATACCAAAATTGTTGGTGACCAGCAGTTAATAATTTCTGACAAAGAAGGGGTGAATAGCAGTTATCTACAAATTGTCGGGTCGGATAACATTTACATCGAAAAACAATCTCTGACAAAAATCATAGGAAATCGTTACGTTCGTCAAATTAACGTTGAAAAATCTGAAGATGAGAAGCGCGGATCAGATGGGGATCATAAAGCGTCCCGTAAAAGCCTACCGCACAAAAAAAGGATATCGCGTAAACTTAAGAAACAAATTTCAATTAAAGTCCAATGCAATTTATGTGAGCAACAATTTAGTTCAGCTGATGATCTTGCGCAACATCAAATGCTTTGCCAAACTACGATCACCCCGATTAATCAGACACCATTTTCCTGTCAGATTTGCAACGCAAGCTTTGAGGATCAGCTGAAATTTTTTGAGCATTTGAAATCGCATTATGAACCGACGAATCAAAATCAAAGCGAGACAACACTTCTTGCACAGGAAAAAAATGAAACAGCTGATTTGGCTGATAAAGATAATATTTTTACTTCATTATTGAATCTGACGTGTATTCAGTGTAATAAAACATTTAGACGGCAAAAAGCTTTAGAGGCACATATAAGGGATATGCAtcaaaaggtagaactgaatgagttcagcgaaactgaagacttgatggaaggaatcagtgtcgtAGTCGAAGGGCACGAACCCCATTCGGATAGTGACACAAAAGTATGGTACCGCGAGGAAGAATTACATCAGACAGAGGAAGACTTGAAAGAACTTGAAGCTGATGAACATATTTGCCACATATGTAATCAACCTTTTCCGCTTAGAGCTATCTTATTACAACATTTAGTCACATGCCGAGTAGTTTCTGGAAATACTGAACCTACAGCACCTAATCTTGTTAAAAAGAAGAATAAAAAAAAACCTACAATGCATTGCAGTGaatgtgatagggtttttacacataggaattcgttggtttaccatatgagaagtcattcaggaattagacctcatcagtgcgaccaatgcggaaaaagtttctttgcggctagtgctctcaaagttcatcttcgattacatacaggtgataagccgtatcgttgcgaagaatgtggaaggaatttccggcaatggggtgacttaaaatatcacaatacctcaatacattcgaatgaaaagcaattccaatgtgaatattgcggaaaagactttgcccgaaagtattctttaattgttcatcgtcgaatacatacgggagagaagaactatcgttgcgaattttgtggaaaaacctttagagcgtcgtcctatttacaaaatcataggagaattcacacggGGGAAAAACCTCATGAGTGCAGTATTTGCGGCAAGCCTTTCCGAGTCAGGTCGGACATGAAGCGACATCAAAAAACTCATACCAAAAGAATTATTCCTGGGAAAACGGTGAGATATACAACACCACAGCATCAAATCTTAGAAAAAGTGATCAAAACAGAGGCTGGAAGTGATCTACCTGACGAGGTTTACGAGTTGAACGTTCAAGAAAGTGAAGAAAATGCCGAGTCAGATCATATTTTAGGATACACTGAAGGTCAATTGGAAACTGTAAGGGATGGCAACACTGTATATGTTATGATGTGTTAA
Protein Sequence: MENSETNGEILQNVVISEGAAGAEYMIQRLPESSPLLESELLEHHNGLVVDLAETDFIPVPYNSETLLTHDLTEEDRNLAAALVAVQFSQHQKQQHVQETNLQSLVQNTAIDTKIVGDQQLIISDKEGVNSSYLQIVGSDNIYIEKQSLTKIIGNRYVRQINVEKSEDEKRGSDGDHKASRKSLPHKKRISRKLKKQISIKVQCNLCEQQFSSADDLAQHQMLCQTTITPINQTPFSCQICNASFEDQLKFFEHLKSHYEPTNQNQSETTLLAQEKNETADLADKDNIFTSLLNLTCIQCNKTFRRQKALEAHIRDMHQKVELNEFSETEDLMEGISVVVEGHEPHSDSDTKVWYREEELHQTEEDLKELEADEHICHICNQPFPLRAILLQHLVTCRVVSGNTEPTAPNLVKKKNKKKPTMHCSECDRVFTHRNSLVYHMRSHSGIRPHQCDQCGKSFFAASALKVHLRLHTGDKPYRCEECGRNFRQWGDLKYHNTSIHSNEKQFQCEYCGKDFARKYSLIVHRRIHTGEKNYRCEFCGKTFRASSYLQNHRRIHTGEKPHECSICGKPFRVRSDMKRHQKTHTKRIIPGKTVRYTTPQHQILEKVIKTEAGSDLPDEVYELNVQESEENAESDHILGYTEGQLETVRDGNTVYVMMC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -