Lhir004669.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375796.1:1321014-1324151[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.2e-05 0.0031 18.6 0.7 1 23 136 158 136 158 0.95 2 14 0.0028 0.14 13.4 1.2 3 23 166 186 165 186 0.99 3 14 0.00024 0.012 16.7 0.1 1 23 296 318 296 318 0.98 4 14 0.12 6 8.2 0.2 1 23 324 347 324 347 0.94 5 14 4.8e-06 0.00024 22.1 4.0 1 23 376 398 376 398 0.98 6 14 0.01 0.5 11.6 0.0 1 23 411 433 411 433 0.94 7 14 0.13 6.6 8.1 1.9 2 19 470 487 470 488 0.96 8 14 0.00053 0.026 15.7 3.6 1 23 497 519 497 519 0.97 9 14 0.0043 0.22 12.8 0.3 2 23 525 546 524 546 0.96 10 14 2e-05 0.001 20.1 0.4 1 23 554 576 554 576 0.98 11 14 0.0086 0.43 11.8 0.2 3 23 584 604 582 604 0.97 12 14 0.00027 0.014 16.6 0.3 1 23 610 632 610 633 0.95 13 14 0.079 4 8.8 1.5 1 23 647 669 647 669 0.96 14 14 0.011 0.56 11.5 0.1 1 20 1022 1041 1022 1044 0.93
Sequence Information
- Coding Sequence
- ATGGAAGATAATTTTGCTTTAACTTGGGAAGAGGATCCCGGTGCTCAAGTGGTTCAAAGCGAAGAAGTAATTTGCAGCATCGAAAATGAATTACTTCCGACCGAAACTGAAGAACAGTACGTTTGCGATCCAACTGAGGAAGAAACGTCGGAAGTGATTGAAGAATCGATTGAAACGGAAGAAAGTAACATTGTATATATTACAGATGATAATGTTCTTGTTATGCAACCGACTCATGAGTATATGGTTGGCGAGAGTATTGTTACGGATCAATGGGGCGAAAGTTGTCCAGAGGAGATTGTTGTTGGATCTGAGCAAGCAATTGGTGGTAGTGAAGAGCAAGCGAATGAAGATTTTGATATTCCATTACCGACAGATCAAGATGAATATACAGCATCAAGACCATATCCATGCGATTTTTGCAGTCGAAGATTTAGGAAGAAAGCCAATTTGATGAATCATATGGTTGCACATCAAACTGATCGACCACATGGTTGTAATCTATGTGGTGTTAGATATATACGAAAATGTGATTTAATGAATCATCTGAAAATCCATGCTTATATACCAGAAACAGATGGTCTTGAAGAAGAAGATGTACAACCATTAGATGACAGCGATGGAGAAAAAATGCCACGACGAAGAGCTAAATCATTCCAAAATAAAAAACGTAAAGTGCATAAAGTTAAAGAAGAATATCAAGAATCGTTTGAAGGCGATGAAAATGTTGCTTCTTCAAGTTCACGTTCATATAATTATGTTGATGAAGATATGCGTTTAATGGAAGCAATGGAGAATAATGTTAAGCATGATTATGCTGATTATCAAGATTATGATAATCAATCGATGGAAGTGCGTTATCCAATTACCGATTCACGGAAAccttttgtttgtcaacattgtggtgttggatttgctcgagagaaagctttagcttcgcatgctagaattcatggaggcgatagtcctttcgaatgtcaaaaatgtggggaaatgttttgGGATATGGCATTAATGCGTGAACATGTTCGCCAAAAGCATGGTGAAATTGCTGAAGAGGAAGAATTTATCGAAGAAGAGGATGAAGATGATGATTATTCTGAAGAGGAAACAAAATATGGCACATTTTATTGTTCGACGTGTGGTTTATCATTTCATCGACAAGATAATTTGAAGAGACATCAGAAAGTTCATATTAAAGAGGAATTTATTAACGATCATGAATTTGGTCATATTTGTAATGTTTGTGGAGAATCTTTTCCAGAAGCTTTAGATTTACTTGCGCATGCTGAGATACATGCGCGAGGATCTGAATGTAGATGTATGATTTGTGGCGAAATTGGGAGTGACGATCAGGCGGTTGCTGCGCATGTTCAATTAAAACATGGCAAGAATTTACCATCAAATACTTGCATGTTATGCGGACGAACATGTAAAGATCGTCGTACACTTCTCAAGCATTCATGGGAACATTCAAAAGAGAAAAGCTTTGCATGTTCTAAGTGTGCGAAAACATTTCATAATAAAGCACGCTTAAAACGTCATATGCTTTCACATCGAAATAAGATTGTTTCGTGTGATATTTGTGGCGAAGAGTTTCCCGACGGTCGATCATTGATGAATCATCGACATAGTCATAATAGTCTATCAGGCAgacaatttccgtgtcgagaatgtgggaaaacattcggatcacgcagttctcaacaaattcatataagaattcatactggcgagcgaccttacggctgtcgtttctgttggaaagcttttgctgatggtggaactttgcgcaagcatgagcgtattcatactggagaaaagccttacgcatgcgcggtatgtccaagagcttttaaccaaagAGTTGTTTTAAGAGAACATATAAGATCTCATCATTCTGGTCCTGATCCAAAATATACCCATAGTGTCACACCATATTGTTGCTCAGTTTGTTCAGATATGTTTGCAACTTCACAAGATCTTATTGTACACTTGATACATCATTGCGATTTGAATACGGCAATGAAACGACAACCGCAAGTTGGGCCTAGAAAGTACAAACGAAGACGAAAATTAAAACCACATGAATTGGAAATGATTTCGAATAAACCCGATGAGGAAGATGTTGTTGAAGAAGAAGAGGAAGATCCACAGCACCAACAGCAGCAGCAAAGATATATAACTGATTCGGAAGAAGAAAATGAACGAGAGGTGAAGAGAAAGATTAGTAGAAGAGCGAAGAAAAATTCACCAAAACCGGCAGTACCGGTATTGAATGATTCTTATACTGAATTTTATGGTAGTAGTACAACTTTGGACAATAGTAGTAATTCGTATCCAACAAAATCAGCAACAAAAAATAAAAGAAAAGTTAAAGCTGAGCCAACTGTACCTTCGAGACCGAAAATGATACATACGCAGAAGACTAGAGTGCCTGTTGAAACAGGAGAGGATGGAAAAGTTAGACATAAGACTAAAACTTTAGTTACAAGAACTCAACCGACAGAAATCAAATCTGCTATTGGAGAAAGAATTAGGCCGAGAACTAAAAATGTTAGCTATCATATATTAAATGCGGATAAACTTCCTATTGCTACTTTTCCTCAAGATGATGCTGAACAAGCTGTCAATAATTTGTTAAGAGAAACTGAATATGAACAGGATAATAATAGTTTACAAGAGGAGACTAATGGACAGAATTATGATGAGCAGCAGCAAAGCGAAAGTGGTGACGATCCAGCTATGAATGGTATAATTTATATGCAGCAAGCAGAACAAACACCAGACGTTGCGTTAGAGCAAGAAGTGGAAACTGATATTGGACCAGTGCCAACAAATATAATCAGAGTCACTTCGACCTCATCAGCCATACATAGCCTAAAACCGGGACGAACCATTATTGGACCGGGCAGTAAAGTGGTGCGATTGGTTAAAGGCGGAATGATTATTACAAAAACTAAAAAATTAGAGCCCGAAAATATTCTACCGGATATTAAGCAAGAGGATCCGAGTCCTTTACATGAATTAGCTGAAATTTCAATGCAGCATGCTCAGAATATGTTCAAGTGTGAAATGTGCAGTGCAGTATTTTCTGACCGAGCTAAACTTTTGGATCATGTGCCCATCCATATATGA
- Protein Sequence
- MEDNFALTWEEDPGAQVVQSEEVICSIENELLPTETEEQYVCDPTEEETSEVIEESIETEESNIVYITDDNVLVMQPTHEYMVGESIVTDQWGESCPEEIVVGSEQAIGGSEEQANEDFDIPLPTDQDEYTASRPYPCDFCSRRFRKKANLMNHMVAHQTDRPHGCNLCGVRYIRKCDLMNHLKIHAYIPETDGLEEEDVQPLDDSDGEKMPRRRAKSFQNKKRKVHKVKEEYQESFEGDENVASSSSRSYNYVDEDMRLMEAMENNVKHDYADYQDYDNQSMEVRYPITDSRKPFVCQHCGVGFAREKALASHARIHGGDSPFECQKCGEMFWDMALMREHVRQKHGEIAEEEEFIEEEDEDDDYSEEETKYGTFYCSTCGLSFHRQDNLKRHQKVHIKEEFINDHEFGHICNVCGESFPEALDLLAHAEIHARGSECRCMICGEIGSDDQAVAAHVQLKHGKNLPSNTCMLCGRTCKDRRTLLKHSWEHSKEKSFACSKCAKTFHNKARLKRHMLSHRNKIVSCDICGEEFPDGRSLMNHRHSHNSLSGRQFPCRECGKTFGSRSSQQIHIRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHIRSHHSGPDPKYTHSVTPYCCSVCSDMFATSQDLIVHLIHHCDLNTAMKRQPQVGPRKYKRRRKLKPHELEMISNKPDEEDVVEEEEEDPQHQQQQQRYITDSEEENEREVKRKISRRAKKNSPKPAVPVLNDSYTEFYGSSTTLDNSSNSYPTKSATKNKRKVKAEPTVPSRPKMIHTQKTRVPVETGEDGKVRHKTKTLVTRTQPTEIKSAIGERIRPRTKNVSYHILNADKLPIATFPQDDAEQAVNNLLRETEYEQDNNSLQEETNGQNYDEQQQSESGDDPAMNGIIYMQQAEQTPDVALEQEVETDIGPVPTNIIRVTSTSSAIHSLKPGRTIIGPGSKVVRLVKGGMIITKTKKLEPENILPDIKQEDPSPLHELAEISMQHAQNMFKCEMCSAVFSDRAKLLDHVPIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -