Lhir026823.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lagria hirta
Gene Symbol
SCRT1
Assembly
GCA_947359425.1
Location
OX375797.1:27328766-27332248[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 7.3 3.7e+02 2.6 0.1 3 17 64 78 62 79 0.78
2 13 0.0005 0.025 15.7 0.1 1 23 300 322 300 322 0.95
3 13 3.2e-05 0.0016 19.5 1.5 1 23 330 352 330 352 0.99
4 13 4.3e-05 0.0022 19.1 0.3 3 23 361 381 359 381 0.97
5 13 5.8e-06 0.00029 21.8 1.2 1 23 387 409 387 409 0.99
6 13 0.00028 0.014 16.5 0.8 1 23 416 438 416 438 0.97
7 13 5.3e-05 0.0027 18.8 2.3 1 23 444 466 444 466 0.96
8 13 3.5e-05 0.0017 19.4 0.4 1 23 472 494 472 494 0.98
9 13 1e-06 5.2e-05 24.2 0.7 1 23 500 523 500 523 0.96
10 13 0.00012 0.0059 17.7 0.4 1 23 529 552 529 552 0.95
11 13 1.1e-05 0.00054 21.0 2.6 1 23 558 580 558 580 0.99
12 13 0.00025 0.012 16.7 0.4 1 23 586 608 586 608 0.94
13 13 0.058 2.9 9.2 0.1 1 23 614 638 614 638 0.94

Sequence Information

Coding Sequence
ATGAGTACTACGCCGCCGAATAATAACGTTATTTGTCTGGTATGCAATGGGAGTTGCTCGTCCACTCGCAATACCATCCCTCTTTTCAATAAAGAAAATGGGGCGAACTCCAATAACTCTCTTCTTGAGACCATTAAAAAGGTCCTAAATAGGAACATAGTGGACGATGGAACACAAACGCAGGTTATTTGCAAGAAATGCTTCAAATTGTTTGATGAAGCTGATGAATTGGAACGCCGGCTGAGGGAAATTAAGAGCGAATTAAGCAATAATATTGGAACTACGTCAACAACTCAAAAAAAGGAAGAAATTGTCGAAAATGGGGAGCAAACTGATCCAGATCCTTCCAAGCAAGATAATGAATTGCCACGGAAAATTCTTGATATTCCATCGTCAGATGATGAGACATCGCAGGCCGCCTTAGAGAAAAACCATCTGCAAACGCTTGAAGATATTGAGATGCAGTTGGTGAAAATGCATGGTGGTATGGAAAACGTTGAAACTATTAAACTTAAACCGAAAATGGATGAAATTGAAGAATTTCAAACGTTATCATCTGGCGATATTATTGATTCAGGCGCTGTAGAGCATTCCTCCGATTCGGATTATGAACCACCAGGAGTTACAGAGACTTTTACCATCAAAAGTGGTCAAGACGTCAAAGTGAAGATGGAGCCTTATGGAGACTTGAACAATGGCGATCGTCCAAACATTCTTCGGAAAAGACCCCCATCTGTCGACATGAAAGTAAAAGATGAATCCTTCTCCTATTCGAATCCAATGGTATCCCGACAAGACTCGCTCTTCACTTGTTTGGTATGTGAGGGTGACGAAACAGTTGCAGGTGATGTCCGAGCAATAACAGCGCATATGAGAATGGCTCACGAATTACGCATTTACATTTGTGACGTTTGTGGGCAAGATTTCCGTAAGCGTAACGAGTTATCGGCACATTTGGATGAGCATGTGGCAGCTGAAGAAGGCGATTTTCAGTGCGAAGTTTGTAATAGGATTTTTAGTAATTTAAGACTGTTTCGGATACATAGACGAATGCATTATCCGCAGAATAAGGCTTGGGCTTGTGATCAGTGCGACAAAAAGTATAGTAGTCGCAATTTATTGGAAGAGCATATAAATACGCATACGGGGCTTAGACCGTATGTGTGTAACCAGTGTGGCAAGGATTTTGCATCAAAATACACTTTCCGCGCACATGAAAAGACGCACGAAGCGCGTCCTCGCCCGTTTGCTtgtagccaatgtccaaaatcttttctgagtcaacagaatttgttacaacacgaacgcacccattctggactcaaagaattcagttgtcatttgtgtggtaaacgttttggatcatcgcataatttagaagtgcattcgattgtgcataccggttatcggccgtttgtttgtacaacttgtaataaggcttttgcaagaaaagctgaaattagagatcacgaaagaacgcatactggggaaaggccatatcaatgcgagctgtgtggcgcaacattctcgcagcgttcgaacttgcagtcgcataagcgagcaacacatttagatgataagaggtatgtttgtatggattgtggtaagggttttaaaagacgtcgattgttggattatcatctaaaggcggtgcataccggcgagcgaccttttaaatgtaatgtttgcgatgcaactttcgtttatcccgaacatttcaaaaagcatcgaaggattcatactggagaaaagcctttcctgtgtgaagtatgcggcaaagcatttaatagtagggataatagaaatgcgcataggtttgttcattcggataaaaaaccatatgagtgtctggtctgtgctgctggatttatgaggaaacctctgctctatcagcatatgcaaacacaaggccatttgaaTGATACAATTGTTGTTAATCAACCTAGATTGACTACCGATGATGATCAACTTGTAACCGTCAATTCTAGGGGAGAAATGGAAATTGTTGACCCAATCAGTCTAGCGGAAGCGGTCGATACAAATGTCGAAGACAACAAATTGTATATTTCCGAACACATACTTCAATCGCCTCCTCATGATGATGAAGAGCAAGCAGAAGGGCTTGAAAGCGTTGAACATATTATTATCGATGGACAACATCTGCAATTTGCAACTGACGATGACGAAGAAATGGACACAATTACCGCCGAAACGTTAGCGGAAAGTGAAACACAAATTGTTCAAACGGCTGAAGGGCCTATTCAATTAGTTCGTGTGCGAATACCAAATGATGATGGGGAAGAAGAAGAAGCTTGGATTAGAATAGTCCCCCAATAA
Protein Sequence
MSTTPPNNNVICLVCNGSCSSTRNTIPLFNKENGANSNNSLLETIKKVLNRNIVDDGTQTQVICKKCFKLFDEADELERRLREIKSELSNNIGTTSTTQKKEEIVENGEQTDPDPSKQDNELPRKILDIPSSDDETSQAALEKNHLQTLEDIEMQLVKMHGGMENVETIKLKPKMDEIEEFQTLSSGDIIDSGAVEHSSDSDYEPPGVTETFTIKSGQDVKVKMEPYGDLNNGDRPNILRKRPPSVDMKVKDESFSYSNPMVSRQDSLFTCLVCEGDETVAGDVRAITAHMRMAHELRIYICDVCGQDFRKRNELSAHLDEHVAAEEGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWACDQCDKKYSSRNLLEEHINTHTGLRPYVCNQCGKDFASKYTFRAHEKTHEARPRPFACSQCPKSFLSQQNLLQHERTHSGLKEFSCHLCGKRFGSSHNLEVHSIVHTGYRPFVCTTCNKAFARKAEIRDHERTHTGERPYQCELCGATFSQRSNLQSHKRATHLDDKRYVCMDCGKGFKRRRLLDYHLKAVHTGERPFKCNVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCAAGFMRKPLLYQHMQTQGHLNDTIVVNQPRLTTDDDQLVTVNSRGEMEIVDPISLAEAVDTNVEDNKLYISEHILQSPPHDDEEQAEGLESVEHIIIDGQHLQFATDDDEEMDTITAETLAESETQIVQTAEGPIQLVRVRIPNDDGEEEEAWIRIVPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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