Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375794.1:56306227-56307875[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0033 0.17 13.2 0.3 2 20 225 243 224 245 0.93

2 10 0.0015 0.074 14.2 1.0 2 23 252 273 251 273 0.96

3 10 4.3e-07 2.2e-05 25.4 0.5 3 23 281 301 279 301 0.98

4 10 1.2e-05 0.0006 20.8 0.1 1 23 307 329 307 329 0.99

5 10 3e-06 0.00015 22.7 0.7 1 23 335 357 335 357 0.97

6 10 3.5e-08 1.8e-06 28.8 3.8 1 23 363 386 363 386 0.97

7 10 8.6e-05 0.0043 18.1 0.3 1 20 392 411 392 414 0.92

8 10 2.2e-05 0.0011 20.0 2.3 1 23 420 442 420 442 0.98

9 10 0.00093 0.047 14.9 6.2 1 23 453 475 453 475 0.98

10 10 0.00018 0.0093 17.1 0.1 1 20 479 498 479 500 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0033	0.17	13.2	0.3	2	20	225	243	224	245	0.93
2	10	0.0015	0.074	14.2	1.0	2	23	252	273	251	273	0.96
3	10	4.3e-07	2.2e-05	25.4	0.5	3	23	281	301	279	301	0.98
4	10	1.2e-05	0.0006	20.8	0.1	1	23	307	329	307	329	0.99
5	10	3e-06	0.00015	22.7	0.7	1	23	335	357	335	357	0.97
6	10	3.5e-08	1.8e-06	28.8	3.8	1	23	363	386	363	386	0.97
7	10	8.6e-05	0.0043	18.1	0.3	1	20	392	411	392	414	0.92
8	10	2.2e-05	0.0011	20.0	2.3	1	23	420	442	420	442	0.98
9	10	0.00093	0.047	14.9	6.2	1	23	453	475	453	475	0.98
10	10	0.00018	0.0093	17.1	0.1	1	20	479	498	479	500	0.95

Sequence Information

Coding Sequence: ATGCGTCGAATAAATCTCAATAAGGTGTGCAGATGTTGCCTCAGCGAGCGGGGCCATCTCCGCGAGATATTCTCCACAAAACTGCCAAGAATGATGCAAAGTTGTTCATCGGTCCAGGTCCTTCAAAACGACGATATTCCGCCGTATGTTTGTGTTAGTTGCTTTCATTTAATCGCAAAGTTTTATACGTTTAAGAAAAAGATGGAACGGAGCGATCGTATTTTGCGGAATTATATTAAACAGCATCGGATTAAGCAGAAGGATATTTTGGATATTGCGGTGAGTGAGGCGAAGATTGGACAGGTTAATACGGATGAAGGGGAGCAGCAGGAAGTTATCACTGATGAGGAATTACCATTAAGTCAGAGACAGTCTTTGAAAAAGTCGCGGTTATCTCGAAAGAGTAAAGTTAAAGCTAACAAAATAATTGACGATATAATACGGCAAGAAAAAGTGGAAATAATCGGTGGAAATGAAGTACAAAATATTACATTCCCTAATGAGCCACCACCATTAGTACCCCTAGAAATAACCACATCAAAATCTGACAATACTTCATCATCTTTTATTAAATATTTACCAGAAGATCCTCCGCCTCTAATACCAATCAAACCATTAATTATATCAGAAAATATACTATCAAATGTGGAAAATGTTTTTGATATTAATCTACAATGCAATGTATGTAATCAAGACTTTTCCTCATTGCAACAATTAAAAGAACATAAATTAAATAATTGTAATAGTTCATTGAAATGTAATATTTGTAGGAAGGATTTCAAAGATCGAAAGCGATTGATTGGGCATTTGAAGGGtcatatggttcaaaaagactacggatgtaaaatctgtggtaaaagataccctaatcctagtacatttcgtgtccatatgcgtacccatacaggcgagagacctttcaaatgtcagatttgcaataaaggttttatacgatgggctggagttgttggacatatgcgaactcatcagtcacataaaccttataaatgtgaaacatgtggcaaaggttttaaaatttcttcaaatttagaacgtcataaaattctacattcagattcgttgccattttgttgtaattattgtggtaaaacatttagtcaatcggataatttacaattacacattcggacgtatcatacgaatgagagaccgtatttatgtaatgaatgtggaaagggatttgtcagttcgacgagattaaaccgccatatgtgggtgcacaccgggtataagccttatcggtgtaaaacttgtacgaaagcctACTCAAATTCGAATGATTTGAAAAATCATGAAAGGAATCATTTGGGGGGCGCTAGTGAAGAGGATAAGCCGTATGCTTGTAAGAATTGTGATATGCGATTCTATCATCCTTGTCGATTAATGAAACATATGAAAACACACGAAAGACCTTATGCCTGTACAATCTGCTTAAAAACTTTTACAACCAATGCACTTCTATCGAAACATTTAGCAGCAAAAAGAAGCATACACTATACACACGTCCAAGAACCTCCAACTAGCAATGCCGAAATTGATCAAATATTCTTGGAATACTGA
Protein Sequence: MRRINLNKVCRCCLSERGHLREIFSTKLPRMMQSCSSVQVLQNDDIPPYVCVSCFHLIAKFYTFKKKMERSDRILRNYIKQHRIKQKDILDIAVSEAKIGQVNTDEGEQQEVITDEELPLSQRQSLKKSRLSRKSKVKANKIIDDIIRQEKVEIIGGNEVQNITFPNEPPPLVPLEITTSKSDNTSSSFIKYLPEDPPPLIPIKPLIISENILSNVENVFDINLQCNVCNQDFSSLQQLKEHKLNNCNSSLKCNICRKDFKDRKRLIGHLKGHMVQKDYGCKICGKRYPNPSTFRVHMRTHTGERPFKCQICNKGFIRWAGVVGHMRTHQSHKPYKCETCGKGFKISSNLERHKILHSDSLPFCCNYCGKTFSQSDNLQLHIRTYHTNERPYLCNECGKGFVSSTRLNRHMWVHTGYKPYRCKTCTKAYSNSNDLKNHERNHLGGASEEDKPYACKNCDMRFYHPCRLMKHMKTHERPYACTICLKTFTTNALLSKHLAAKRSIHYTHVQEPPTSNAEIDQIFLEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -