Basic Information

Insect: Lagria hirta
Gene Symbol: -
Assembly: GCA_947359425.1
Location: OX375804.1:8446139-8448519[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0013 0.066 14.4 2.7 1 23 60 82 60 82 0.98

2 16 0.0066 0.33 12.2 2.1 2 23 88 109 88 109 0.97

3 16 0.00012 0.0061 17.7 8.6 1 21 115 135 115 137 0.96

4 16 9.5e-05 0.0048 18.0 1.1 1 23 143 165 143 165 0.96

5 16 0.027 1.4 10.3 0.6 1 23 171 193 171 193 0.90

6 16 0.00026 0.013 16.6 4.9 2 23 200 221 199 221 0.97

7 16 0.098 4.9 8.5 3.2 1 23 226 249 226 249 0.97

8 16 0.027 1.3 10.3 0.3 2 23 253 274 253 274 0.95

9 16 0.00079 0.04 15.1 0.4 3 23 282 303 280 303 0.94

10 16 4.7e-07 2.3e-05 25.3 4.1 1 23 310 332 310 332 0.98

11 16 1.1e-06 5.5e-05 24.1 1.6 1 23 336 358 336 358 0.98

12 16 6.8e-05 0.0034 18.5 4.0 1 23 364 386 364 386 0.98

13 16 0.0067 0.34 12.2 2.5 1 23 392 414 392 414 0.96

14 16 0.00014 0.0068 17.5 1.2 1 23 420 442 420 442 0.98

15 16 0.011 0.55 11.5 3.8 1 20 448 467 448 469 0.94

16 16 0.019 0.95 10.8 0.3 1 23 484 507 484 507 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0013	0.066	14.4	2.7	1	23	60	82	60	82	0.98
2	16	0.0066	0.33	12.2	2.1	2	23	88	109	88	109	0.97
3	16	0.00012	0.0061	17.7	8.6	1	21	115	135	115	137	0.96
4	16	9.5e-05	0.0048	18.0	1.1	1	23	143	165	143	165	0.96
5	16	0.027	1.4	10.3	0.6	1	23	171	193	171	193	0.90
6	16	0.00026	0.013	16.6	4.9	2	23	200	221	199	221	0.97
7	16	0.098	4.9	8.5	3.2	1	23	226	249	226	249	0.97
8	16	0.027	1.3	10.3	0.3	2	23	253	274	253	274	0.95
9	16	0.00079	0.04	15.1	0.4	3	23	282	303	280	303	0.94
10	16	4.7e-07	2.3e-05	25.3	4.1	1	23	310	332	310	332	0.98
11	16	1.1e-06	5.5e-05	24.1	1.6	1	23	336	358	336	358	0.98
12	16	6.8e-05	0.0034	18.5	4.0	1	23	364	386	364	386	0.98
13	16	0.0067	0.34	12.2	2.5	1	23	392	414	392	414	0.96
14	16	0.00014	0.0068	17.5	1.2	1	23	420	442	420	442	0.98
15	16	0.011	0.55	11.5	3.8	1	20	448	467	448	469	0.94
16	16	0.019	0.95	10.8	0.3	1	23	484	507	484	507	0.95

Sequence Information

Coding Sequence: ATGCATGAAATGGAACATATAAAAGTGTCTTCAATTCTTCCAATTGAAGAAATAAAAGTTGAAGATGAGCTGCTTCTAGCTTCCAGTCCGAAGATCATAGATGATTGGAATACATCGAATAAAATTGAATGTAAATTTATCGAAACTAAGATTGAAGGTACAAATGGATCAATTGCGTATAAATGTAAAATATGTGGAGAGCATTTTACAATATTAACAGCGTATAAAGAGCACCGGAAGCAACATTTTGTCTCGAGAAGAACTTGTAAAATGTGTAAAACCGTATGCCAAAGCTTAGATAAACTGGAAATTCATATGAATATTCACTTAGGTGTGAGACCTTATAAGTGCAAAGAATGTGACAAGAGTTTTATTTCCAGACATCATTTAAAATTGCATCAGCGGTGCCACACGACGGAAAGAAAGTATTCTTGCACAAAATGCTCGGAAACGTTTAAATATTTGGACGCTCTAAGACGACATGCATTACAACATAATAATATCAAAGAGTATCGTTGTAAGATCTGCGGAGAGGGCTTCTATGACGTGGAAGCGCATCGAAAGCACGCCGAAAGTCATGGCGAAAAAATCGAAAAAAAATGCCAATTATGCAACAAAACCTTTAATACAGATCGCCATCTTCAAAATCACTTGAATTCTCACAAAGAGTTGAAATTCCCATGTGAATATTGCTGTCGTATTTATCAAACGCTTTACCGCTTAAAGAGACATATAAAGAGAGCGCATATTCCGAATGTGTGTGAAGACTGTAATGAAGTCTTCTACGATCGAGCGATATACACCAAGCACAAAAAGGAGCACAACGAAGAGAAGCCGATAATTTGTCGGTATTGCAGCAAAGCGTTTGATAAGCCGAAAAATTTAAGTGAACATGAAAGACTCCAGCATAAAGTGGATGGATTGGTTCATCAGTGTCACTTATGCGATAAAACATTCATCAACGCTTCTCTATTGAAAAATCATATAAAAACTCATGATAAGTGCTTCAAATGTGAGGTTTGTAATAAACTCTTCAGCTCTCGATATAATCTTCAATCCCATATGGTAACACACACTGGAGAGAAAAACTACCGATGCGATCTTTGCCAAAAAGGATTTTCCACCAAGCACAGCATGAAGAACCACCGGGCGACTCACAGCGATGCGAAAAACTTTCAGTGTGATATGTGTCCGAAATTATTTAAAACGAATCGGAGACTGTATGTCCATAAATTTTCGCACGCGACAGACGAAAAATTCCAATGCGAAATCTGTAGTGCTCGCTTCAAAGTGAAACAGTATTTAAAATACCATATGATCTCGCACTCCAAAGTTAAACCGTACGAATGTAAAGCTTGCCAGAAAAAATTCAAACACAAAAAGTCATGGGAAAAGCATGCAAATCATGACAACAAGCGACACTCTTGGGCTGCCATAAAAAAAATCACTCATCCTTGCGTTTCTTGCGGAGAAAAATTTGAAAGCAGAACGGATGTCTTAGAACATGTTAGAATAAACCATGTTAAAACAATCGCTTTTACCGACTAG
Protein Sequence: MHEMEHIKVSSILPIEEIKVEDELLLASSPKIIDDWNTSNKIECKFIETKIEGTNGSIAYKCKICGEHFTILTAYKEHRKQHFVSRRTCKMCKTVCQSLDKLEIHMNIHLGVRPYKCKECDKSFISRHHLKLHQRCHTTERKYSCTKCSETFKYLDALRRHALQHNNIKEYRCKICGEGFYDVEAHRKHAESHGEKIEKKCQLCNKTFNTDRHLQNHLNSHKELKFPCEYCCRIYQTLYRLKRHIKRAHIPNVCEDCNEVFYDRAIYTKHKKEHNEEKPIICRYCSKAFDKPKNLSEHERLQHKVDGLVHQCHLCDKTFINASLLKNHIKTHDKCFKCEVCNKLFSSRYNLQSHMVTHTGEKNYRCDLCQKGFSTKHSMKNHRATHSDAKNFQCDMCPKLFKTNRRLYVHKFSHATDEKFQCEICSARFKVKQYLKYHMISHSKVKPYECKACQKKFKHKKSWEKHANHDNKRHSWAAIKKITHPCVSCGEKFESRTDVLEHVRINHVKTIAFTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -