Lhir021119.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lagria hirta
Gene Symbol
-
Assembly
GCA_947359425.1
Location
OX375794.1:46922833-46927850[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 5e-06 0.00025 22.0 0.5 2 23 150 171 149 171 0.97
2 16 0.0028 0.14 13.4 4.2 1 23 176 198 176 198 0.97
3 16 0.0005 0.025 15.7 4.9 1 23 204 226 204 226 0.97
4 16 0.029 1.4 10.2 1.6 1 20 232 251 232 253 0.92
5 16 0.00074 0.037 15.2 1.6 1 23 260 282 260 282 0.97
6 16 0.00019 0.0093 17.1 2.9 1 23 483 506 483 506 0.97
7 16 0.01 0.52 11.6 5.1 1 23 512 534 512 534 0.97
8 16 3e-06 0.00015 22.7 1.9 1 23 540 562 540 562 0.98
9 16 0.00011 0.0055 17.8 0.9 1 23 568 591 568 591 0.92
10 16 0.014 0.69 11.2 1.6 1 23 609 631 609 631 0.95
11 16 0.052 2.6 9.4 10.2 1 23 637 659 637 659 0.97
12 16 3.9e-06 0.0002 22.4 0.5 1 23 666 688 666 688 0.96
13 16 2.4e-05 0.0012 19.9 1.3 1 23 694 716 694 716 0.98
14 16 7.4e-07 3.7e-05 24.6 0.9 3 23 724 744 722 744 0.96
15 16 4.9e-05 0.0025 18.9 0.2 1 23 750 772 750 772 0.99
16 16 0.38 19 6.6 0.6 1 23 777 800 777 800 0.97

Sequence Information

Coding Sequence
ATGGAAGTGGGACTTTCCAGCATAAATCGCACATGCCGTACCTGCAGGTCGGAGACCCCAGAAATGAGATCCCTTTTCGAGATCTACGAAATGATGAACGAAAGTCCCCGTATTGACGAGATGCTAATGGCTTGCACGGCAGTTAAGGTTAAAGCTGAGGACGGCTTACCGAGTTTAATATGTATTCAGTGCACCGACCAATTGAAAATTGCCTATTGTTTCAAACAGCAATGTCAACAGTCTGATATGTATTTCAAAGAGTGTCTAAGGAATGTGAGGAATGCTAATATGAAAGCGGAAAAAAACATCAAAGAGGAGATGCAAATTGCTGAAGCAGCTTTTACAGatatttttatggaaacaacGGTTGCAGATGATCCGAAGCCAAGTAACCCAGCTCAACGCTCCGACTACATTGAATTTATGGAAAGCAATCAGATGATATTAACATGCCGCGAATGTGGTAAGGTATTTACCACATTGGATGGTCTTAGAAGTCATAAACGCATTCATTTGGGAACACTTTTTAAATGCCGTTTTTGTGGCAAGGGTTATACACGTCAAACACATGTTTATAGACATGAATTGTCACATGGGAAACATAAAATTCATGTTTGCCGTATCTGCAATAAATCATTAACAAGAATGGAACATCTGAGACGTCATTTAACTACTCACTTGAAAGAAAAACCGTTTCATTGTAAATCTTGTAATAGAGGTTTTAATAGAACGGATCATCTAGACGCACATGCGTTGCGTTGCAAAGGAGATCGGGTGCATATTTGTGATATTTGTAACAGAGGATTTTCTAGATTTGATAGTATGGAAGTTCATAAGAAAATGCACGAAAATCAGAAACCTGTTTTACCAACTTTAGATAATATAGATAATATAGAAGAGCATTATTACGAAATTGATTTTGATCCTAATATGGACGATTCCGTAACTATATGTTCTAACGGATCTGATGTTGAAGATCTCTTAGAGCCTCAAGTTGAGGTTAATGAAAATGTTGATGAAGAAGATGATGAAGAGTTGAAAGGAATAGGTGTTTTAAATACGGAGGAAAAAATCTTTGATGTATCTCTTGCGAACGATGACAGTATGGAAAATATAGACAATTCTGAAAATCTTGAAAACAATGAAAACACAGAGCCTAATAATTTAACAAATGAAAGTGGACTAAATGACAGATCGTCAACATCATCAGCCATGAATGAAGCTGTCGAAACGGCTGAAGGAAAGTTTGACATTTTTCAAGAAGCTTCTGAAGGCGCAAATGATGCTGTTGCTGACAACGACTCAGACAGTGTCCATTCGGAATACCTTCCAACGAAAACTAAGAAAAGGGGTCGTGGCAGACCTAGAAAATTCCCAAAAAACTCAAGACCGCGCGGTAGGCCGAAAAAGACGGAAATTAAAAGAGAAGTTGAAGAGGAAGATGAATATGCTTGTAATTTTTGCAGTGAATCTTTCAAAAAAATGAGCCATTTAGATAAACATATTCGACGAATTCATGATTCGGTTAAGGAATACAATTGCACTTTTTGTATTAAAACATTTTCAAGGTATAATCATTATAAACGACATATAGCTAGCCACCAAACAGTCAAGCCATTTACGTGTGATACTTGTGGAAAAGGATTTGCTCGTAGAGATCATCTTCGGCAGCATGTGAAACTACATGATAAAAAACTTGAGTACGATTGTGATGAATGTAGCAAGAAATTTAATAGAGCTGACCAATTAGCTAAGCACAAAGTTTCCAAGCACGGTTCATCAGAAGTGATTAATGTTTTATTACAGAGTTTTGGCGAGAAGAAATTCGAATGCGAGGTATGCCGAAAGACTTTTACGACAGAAAAATACAGGGATGTTCATTATAAGGGAcatttaggagaaaaacggcatcaatgtagaacttgtcaaaaatgctttttatcaaagtcgcatttaactgaacatatgaaatttcataatgaccattccaaaaagtttctttgctccgaatgcggacaaagatttattcgaaatgattaccttgtcatccatatgcgaagacatcgaggagagaagccttttaaatgtaaattttgtggcaaaggttttccacggaccaccgatttgacggtacacgagcgatatcatactggagaaaagacgcatttatgtacaatatgtggCCGGGGCTTTGGACGggcttataatttaacagtgcacatgagaactcatacgggggaaaagccatatcggtgcacttattgtgatgcagcttttgctcaaggaaatgatcttaaagcacatgttcgaaggcacactggtgaacgatttcaatgtgaattatgtagtgaaaattttcTTATGGGATATCTTCTCACACAACATAAAAGAACTGTTCACGGTTTAAATGTTGTTAGTAATATTCGAAGACTTCAACCCCTCGACAAAATAAAGCAGGACCTAGATGAACCTCCACCAATTACAATTCCACTTCCAAAACCTATAATACCTGATGCTGTTTTCAACAATATAAGCGCTCATTTAGCAGCTCAAATTCAAAATCATCATTTGGGGCCACTGACCCATCATCAATAG
Protein Sequence
MEVGLSSINRTCRTCRSETPEMRSLFEIYEMMNESPRIDEMLMACTAVKVKAEDGLPSLICIQCTDQLKIAYCFKQQCQQSDMYFKECLRNVRNANMKAEKNIKEEMQIAEAAFTDIFMETTVADDPKPSNPAQRSDYIEFMESNQMILTCRECGKVFTTLDGLRSHKRIHLGTLFKCRFCGKGYTRQTHVYRHELSHGKHKIHVCRICNKSLTRMEHLRRHLTTHLKEKPFHCKSCNRGFNRTDHLDAHALRCKGDRVHICDICNRGFSRFDSMEVHKKMHENQKPVLPTLDNIDNIEEHYYEIDFDPNMDDSVTICSNGSDVEDLLEPQVEVNENVDEEDDEELKGIGVLNTEEKIFDVSLANDDSMENIDNSENLENNENTEPNNLTNESGLNDRSSTSSAMNEAVETAEGKFDIFQEASEGANDAVADNDSDSVHSEYLPTKTKKRGRGRPRKFPKNSRPRGRPKKTEIKREVEEEDEYACNFCSESFKKMSHLDKHIRRIHDSVKEYNCTFCIKTFSRYNHYKRHIASHQTVKPFTCDTCGKGFARRDHLRQHVKLHDKKLEYDCDECSKKFNRADQLAKHKVSKHGSSEVINVLLQSFGEKKFECEVCRKTFTTEKYRDVHYKGHLGEKRHQCRTCQKCFLSKSHLTEHMKFHNDHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKFCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKAHVRRHTGERFQCELCSENFLMGYLLTQHKRTVHGLNVVSNIRRLQPLDKIKQDLDEPPPITIPLPKPIIPDAVFNNISAHLAAQIQNHHLGPLTHHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-