Lhir014097.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375800.1:24086097-24097760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00045 0.023 15.9 1.5 1 23 96 119 96 119 0.91 2 20 0.24 12 7.3 1.6 1 23 125 147 125 147 0.95 3 20 5.1e-05 0.0026 18.8 0.1 1 23 152 175 152 175 0.91 4 20 0.1 5.2 8.5 0.8 1 23 179 202 179 202 0.94 5 20 0.0097 0.49 11.7 0.1 3 23 210 231 208 231 0.95 6 20 0.0048 0.24 12.6 0.6 1 23 262 285 262 285 0.95 7 20 0.0057 0.29 12.4 0.8 2 23 292 313 291 313 0.95 8 20 0.00095 0.047 14.9 2.0 1 23 318 341 318 341 0.96 9 20 0.013 0.65 11.3 1.9 1 23 350 373 350 373 0.95 10 20 0.012 0.6 11.4 0.1 2 23 380 402 379 402 0.90 11 20 7.5e-06 0.00038 21.5 4.2 1 23 429 451 429 451 0.99 12 20 0.002 0.1 13.8 3.1 1 23 456 479 456 479 0.95 13 20 6.9 3.5e+02 2.7 1.1 1 23 484 506 484 507 0.89 14 20 0.0041 0.2 12.9 0.4 2 23 514 536 513 536 0.95 15 20 0.0002 0.01 17.0 2.5 1 23 541 563 541 563 0.98 16 20 0.0012 0.061 14.5 0.3 2 23 571 592 570 592 0.96 17 20 3.9e-06 0.00019 22.4 3.3 3 23 601 621 600 621 0.97 18 20 0.00043 0.022 15.9 1.0 5 23 631 649 630 649 0.96 19 20 1e-05 0.0005 21.1 0.2 1 23 655 677 655 677 0.94 20 20 0.0011 0.057 14.6 1.0 1 21 683 703 683 704 0.93
Sequence Information
- Coding Sequence
- ATGGCTCTGTTGTACATCCTACAATTACAAACATATATACATACACACACATATAAGCCAGACAAAAGCCATTTTCCTTGTACAAGACGATTCTTGCCTGAGTGGAAATCGAACCCACGACCCCGCCAGGCGAGACTCCAACGTACTATCGGTTGGCCATCTGATCCACCGAGATCCTCGATTCAAATAGGCTTTGGATGCTGTACGGCCAATTTTTCATTAAATGTATCGGCCACTAAAAGTCAGCATTATTTTCACACGAATTTGAGCAATACGGTATTTACTCATAAATGCGATCAATGCAACAGAGTCTTCCGCTACGCAGGCACATTGAAAAGCCATAAAGAAGATGCGCATAAAGAAAAATCTGAATTTCAATGTAATGTTTGCTTTAAATCAATGGAAAGCCGAAAAGCTTTGTCGGAGCATTACTTCCAACATATAGAACGCCGATACATATGCAGCGAGTGCGACAAGGTGTATGCTACCGCATCCGAGCTGAAAAGTCACGAGGAAGAGGAGCATATAAAGTTTTTTTTTTGCGCTTTTTGCAGTTTTGCGACTTCGAACTCGAAAGAGTTTAAGGCGCATATTGTGAGAGAGCACAGCAAAATCGGACGGATTATTTGCCGACTTTGCGAAGCTAGCTTTTCGAACAGACTTGAGCTGAAGGAGCACGTGAAAGTGGCTCATGATACTGCTGAATTTGATTTTATATCAACTTACTACCATGACGTCAAAATTGATAATGAAATTAAAGAAGAGCCGCTGAGCCATGTGGCTTACCGTTGCAACTACTGTAGCATGATCTTTTATTACATTGACAGTTTAAATTACCACATTGGAAGAGTGCACAAAGATAGACCAAATCTGGAATGTAAAGTCTGCCACAAAGTATCAAAAAGCAAGAGGGCTTATTGGGCGCATGCCATCCGCCACCGGGAGCCGCGCCATCAATGCACCAAGTGCGAGAAGAAGTTTTTTGTCCCTGCCGGGTTGAAGCGGCATGTGGAAAGGTACCATGAAAACACGCTTCTTGAGAAGAAATTCGCTTGCACTTATTGTGAATATAAGAGCACTACGAATTATTATCTAAATTACCACGTGATTCGGAAGCATACGAGGAATTTTCCGGTGAAATGTGACCAATGTAATGCGGGATTTATCTATAGCTCCGAGTTGAAGTTGCACGAGGAAGAGGAGCATCAAGGGAAGGTATGGAGCCTCATTTGCAAGTCTGAGACAGATGTTTCAAATTTAGAATATTTTGATACCAGTTCTCCTTTCCAATGTACAATTTGTCATAAGAGCTTGAAAAACAAGCGCAGCTTAACAGCTCATCTCAGGAGGCATGGAGATCCTCAACATAGGTGTATGGAGTGCGGCAAAGTATTCCACACTGCGATTGAGTTGAAATATCACACGGAGAGATATCACGAGATGAAAACGTTTTCTTGTGAGTACTGCGAGTACCGGAATGCAAAAGAAAGCGTGGTGAAAGCTCACACTATCACGCATCATACGAAAGCATTCCCACTAAGTTGTCGGATTTGCAAAGTTGGCTTTAACTTCAATTATCAATTGAAGGAGCACATTGAGATGCAACATGAGGGAGTTATTTACCACTGCACACAGTGTCCGCGTACTTTTAAGCGAAAGCAGCTCTTGGGCTGGCATCAGAGCGTCCATCAAACGGAGAAGACGCCCTTAATATGCGAAATGTGTCAGCAAGTGTACATGTCCATCGGTGGCTTCCGCCGCcatatgcgaactcatacacggcaatttgtcaagccaatttgcgacctgtgtgggaagtgttttgcttcaaacgagcatcttcgtcggcatctcaaaatccacgccggcatcaaggattttgcttacgatacttgccggaaggcttttgcaactcactccgatttgaagctccatattcggactcatacgaaggaaaagccttacctctgcaacgagtgcggaaaagcgttttcgcaaaggggcagtcttacattacatgtattattgcattccggggtgaagcctttcaagtgcatcggctgtgacaaggcgtttgtaactaaaacgcaacttaacgctcatagatgcTCAGCAGAAATTGCTGTTGTCTTTCCTACACCGCTCTGCGTATGCCCCAAAGATCCATGCCCAATGATCCATCTTCCGATGATTGCAGCTGACCCAAGCTTTCACATTTTAAATTACTTTTTTGGTCCACTGAGCTCTGCCACTTGGTGA
- Protein Sequence
- MALLYILQLQTYIHTHTYKPDKSHFPCTRRFLPEWKSNPRPRQARLQRTIGWPSDPPRSSIQIGFGCCTANFSLNVSATKSQHYFHTNLSNTVFTHKCDQCNRVFRYAGTLKSHKEDAHKEKSEFQCNVCFKSMESRKALSEHYFQHIERRYICSECDKVYATASELKSHEEEEHIKFFFCAFCSFATSNSKEFKAHIVREHSKIGRIICRLCEASFSNRLELKEHVKVAHDTAEFDFISTYYHDVKIDNEIKEEPLSHVAYRCNYCSMIFYYIDSLNYHIGRVHKDRPNLECKVCHKVSKSKRAYWAHAIRHREPRHQCTKCEKKFFVPAGLKRHVERYHENTLLEKKFACTYCEYKSTTNYYLNYHVIRKHTRNFPVKCDQCNAGFIYSSELKLHEEEEHQGKVWSLICKSETDVSNLEYFDTSSPFQCTICHKSLKNKRSLTAHLRRHGDPQHRCMECGKVFHTAIELKYHTERYHEMKTFSCEYCEYRNAKESVVKAHTITHHTKAFPLSCRICKVGFNFNYQLKEHIEMQHEGVIYHCTQCPRTFKRKQLLGWHQSVHQTEKTPLICEMCQQVYMSIGGFRRHMRTHTRQFVKPICDLCGKCFASNEHLRRHLKIHAGIKDFAYDTCRKAFATHSDLKLHIRTHTKEKPYLCNECGKAFSQRGSLTLHVLLHSGVKPFKCIGCDKAFVTKTQLNAHRCSAEIAVVFPTPLCVCPKDPCPMIHLPMIAADPSFHILNYFFGPLSSATW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -