Lhir005930.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lagria hirta
Gene Symbol
ZNF236
Assembly
GCA_947359425.1
Location
OX375796.1:19695401-19703811[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.028 1.4 10.2 0.3 1 23 115 137 115 137 0.97
2 24 0.00015 0.0077 17.3 0.2 2 23 143 164 142 164 0.97
3 24 0.022 1.1 10.5 0.4 1 23 170 193 170 193 0.97
4 24 2.2 1.1e+02 4.3 3.6 3 23 204 224 202 224 0.94
5 24 7.1e-05 0.0035 18.4 1.7 3 23 252 272 251 272 0.97
6 24 5.1e-05 0.0026 18.8 2.9 1 23 278 300 278 300 0.98
7 24 0.022 1.1 10.5 5.5 1 23 306 329 306 329 0.96
8 24 0.47 24 6.4 2.4 1 23 339 362 339 362 0.96
9 24 8.7e-07 4.4e-05 24.4 1.5 1 23 425 447 425 447 0.98
10 24 0.00034 0.017 16.3 4.1 1 23 453 475 453 475 0.98
11 24 0.014 0.68 11.2 1.6 1 23 481 503 481 503 0.99
12 24 0.0036 0.18 13.0 0.9 1 23 510 533 510 533 0.93
13 24 8e-05 0.004 18.2 2.7 1 23 570 592 570 592 0.97
14 24 0.00081 0.041 15.1 0.9 1 23 598 620 598 620 0.97
15 24 3e-06 0.00015 22.7 2.3 1 23 626 648 626 648 0.99
16 24 0.026 1.3 10.3 2.0 1 23 654 676 654 676 0.98
17 24 0.061 3.1 9.2 0.1 1 23 884 906 884 906 0.97
18 24 1.2e-06 6e-05 24.0 2.6 2 23 923 944 923 944 0.97
19 24 1.2e-05 0.0006 20.8 2.6 1 23 950 972 950 972 0.99
20 24 0.00028 0.014 16.5 2.8 1 23 980 1002 980 1002 0.96
21 24 0.04 2 9.7 3.6 1 23 1008 1031 1008 1031 0.95
22 24 0.00012 0.006 17.7 2.5 1 23 1143 1165 1143 1165 0.98
23 24 0.00016 0.0078 17.3 0.2 1 23 1170 1192 1170 1192 0.98
24 24 0.44 22 6.5 0.3 1 21 1198 1218 1198 1219 0.94

Sequence Information

Coding Sequence
ATGCCTGAGTTTTACAATTTTGATAAAAATGCAACGTTTTTGGCTCTCCCTTTGGAGACTACAGAAAGTTCTGCTCAACAAAACGATATACAAACCACAATTTTAATATATACTACGGGCCAGCCCGGATTAGATCAGCAGTTTGAAGCTCTTTCTCAGGGTGTGTTTACTTCTGCGGTTATGCCTCCACAAAATTCTATTGATGATCTCAATTCGTTGGTGCTCTTAAATTCAACTTCTGTTGAAGAACCTAAATCAGTAGCCGATACATACTGGTGTACCGATGTATCTAAAGATAGCACACAAAAGAAGCCGCTCAAATCGCATAAATTGCCAAAAACATTCGTTTGTGAAAAATGTTCCATAAATTTTAACATTGAAACTAATTTTAATCTTCATATGGCTTTGCATGCTAAAGATATTCTTAAGTGTCCTATCTGTAACATCACTTTTCAACGTACCGCAAGTTTAAAGTCACATTTGTTGATACATCAAATAGAGGAAACTTATATTTGCGAGCAGTGCAGCGCTGAGTTTGATAAAGAGGTAGAGTTTAAAAAACATGTACAAACCCGACACAGTAAAAATCTAGACACGAAAAACATGATTTGTAAAATTTGTAATGTGAAATTTGACAAACATGTAAAATACAAAGAGCACGTATCACACCATCGCAAGATGAAAAAATTAATTTCTTCCACTAAAAAATCACGACGAAGAGTTTCTTCAAAAGGCAAAGACTTGCGGAATATGTGCAAAGTGTGCTATAAAGTTTTTTCACTGCCTTCTCATTTGGAACGTCATTTTCGCATTCATAGTGGTGAACGTCCATATATGTGTTCGCAATGCCACCGTGGATTTAGGCAAAAAAGCACTCTTCAAATACATTTAGCTAAGCATACAGGAGTTAAAGCTTTTCACTGTACTCTTTGTAGTGCAAAATTCCACCAAAAAAGCAACTTAAAAGTGCATGTTTCAAAAACACACACAGCTCCAGTGGCGGGAGTTAATGTTTTCAAATGCGCTCATTGTAGTTGTATTTTTCAAAAAATAGCTTCTTTGAATGTCCATGTTGCCAAATCTCATGCGACACATAAAGATGGAAGCTCGATTTTTAGTGTTATCAGCAGGTTGAAAGAGTTGGATGTCCAACCGCTGTCGTCAAATGAAAAAGTTGAAGGATCTTATTATGTAAAGTTGTCCGAATCGTTTCTTGATGGAACCGTGAAAAGGTATTTGGTTAGGCAGAAAAAAGTTAATAACGTCAGGTGGTATATTTGTACTTATTGCTCAAAAGAGTTCAAGAAACCATCCGATTTGATTCGTCATACGAGAACACATACAAAAGAAAAACCATTTATGTGTAAACAATGTGGTGTTTCTTTTTCTCTGAAAACTACTTTATTTCATCATTTGAAGACTCATAATAGAAGCAATAGCTATACATGTGGTATTTGTACAAAAAAATTTTTATCTGTTCGGACATTCACAGCTCACCTCAAAACACATGTTGAAACGAAAAATCAGTTTCGTTGTAACAGTTGTAATAAAATATTCAACACTGCGGACAAGGCAAAAAGGCATTATGAGGAAGTTCATGATCAAAATCCGGAATGTGAGCAGTTAAAAGTACCACTGGTCAATACCCCAAATGGACTATTGCCTATATCAGCAAATAAAACCCAATTAGATCCTAAAACGAAACCTTATAGTTGTCAACTGTGTAATACAAGATTTAGTAAAATGTCAAACTTGAACCGGCATATGTTTCTACATAATGATCAAAGGAAATATAGATGCAGTGTATGTTCGAAGCGATTCAATTCACAGCAGAGTTTAGATGAACACAAAGCTGTTCATTCTGATCTTAAAACTTTTCAGTGCAATCTTTGTGAAAAAGTTTTTAAAACAAGCACGCTATTGAAAAGACACACGCTTACTCACAGTACTGATAAACCATTTGTTTGTCCGTATTGTATGAAGACTTTCAAAACCATTGCGCTTTGTCGAAAGCACATAAACATCCACAAAAAAGATGTCTATTTTCAGAACATGGCAATGTTTGAACAAGTCAGTGCTGCTACCGAAACGACCGACAAAAATAATTCTTTACTTCTAATAACGCAAGATTTGTTAGAAAAAACATCCGATGATATCTCTAAATCTACAGTGCTTGATAATACAACGGAAAATCAAGTCTATCAAGTACTTCCCAATACTGTTGAAATTATTTCTAATGGTGTAGGAGACGTCCAGCCTCAAATCTTTATTAGCTGTAATGATTTACAACTGAATGACGGCGTTGCGTATCCTCAAAATAAGCTAGAGAATTCCGACACAATGCTGTTCAATGCCGTAAGTGATATTCAAGACACCAATGTTTTAAATGTGGACCCCATAACCCAAAATACAGAAATTTTTAATAGCGAGATTTTCGCCGAAAATCTTTCAAATGATATTGAGGGGGGGTCTAATAAAGTTATAAAAATTAATAATGTCAACAATGCACATTACTACGTACCAAACTCCGAATTGAACTTACTGTTCAATCTTGATTTAGAAGAAAGCAATAGTGATATACCAAATGATAATTTGATGGAATTGACTGACGTTTCAGCAGTGGGGCCACAAATGGCACAAGAAAGCTCGTTTGTTTGTGAAACATGTATGGACGTTTTTACATCAAAAGTTTTGTTAGAGGAACATGCAAGAACTCACGATACTATAACAAGCAAAACAGCACCTACAAAAAAAGATGCTAGCAATTCTTGTTCTTTTTGTGGCAAACAGTTTAAAAAATCTTCAGATTTGACAAGACATATTAGAACTCACACCGGAGAGAGGCCATTCAAATGTGACAAATGCGAGAAGAACTTTTCTTTAAAGTCTACTTTGGTATCACATCAACGAACACACAATCCCGTGAGTCACAAACAGCATAATTGTTCTGTTTGTAATTCATTTTTTACGTCGAAGTCCAGTCTTAAAGTGCATATGAGCATACACACAGGCGACAAAACTTATCAGTGCAACTTTTGTCCGATGAAATTTCGTATGCCTTCACATAAAAAGTCTCATGAAAATAATCAGCATTCAAAGTTTTTCGAGCGGAAAGTTAAAAGCAGCGTTACGGACCTTTTAGAGTCTGTAGCAATGGAAAGTTTCAGCGCTGAGCAAATTCCATTAGAGAACGAGCAATTAATCACTGATTGTCTAGACAATGTCTTAGTGACACACATAAATATCGAACCCTTGGATGATCAGATCTCTCCTGCTGTAACTCAGCCAATGATTCTACAACAAGTCCAGCCAAATCTTCTGCTCCACGATAACTCATCGTCTGTAATTCAATTGGATGATGGATATTTGCTCAATGTTCAGCCAGTCACTCCAGTCCAGTCATCAGAGAATAAAAAACCACGTATTTTTGAATGTGACGTCTGCCATAAAACTTACGCAACCAAAGATGTTTTGAGAAAACATAAGAAAATTCATATTAATAAGAAGTTTCCGTGTACAATATGTGATAAAGGATTTGAAACGGAAGAGAGTCAGAATATTCATATAAAAACTCATGATGGATTTAGGCCTTATGCTTGCATGCAGTGTGCAAATAGTTTTATGAACGAAAACAGCTTATTTACGCATATGAAGAGTATAGAGAATTTAGATCATGTTACCGACAACTAA
Protein Sequence
MPEFYNFDKNATFLALPLETTESSAQQNDIQTTILIYTTGQPGLDQQFEALSQGVFTSAVMPPQNSIDDLNSLVLLNSTSVEEPKSVADTYWCTDVSKDSTQKKPLKSHKLPKTFVCEKCSINFNIETNFNLHMALHAKDILKCPICNITFQRTASLKSHLLIHQIEETYICEQCSAEFDKEVEFKKHVQTRHSKNLDTKNMICKICNVKFDKHVKYKEHVSHHRKMKKLISSTKKSRRRVSSKGKDLRNMCKVCYKVFSLPSHLERHFRIHSGERPYMCSQCHRGFRQKSTLQIHLAKHTGVKAFHCTLCSAKFHQKSNLKVHVSKTHTAPVAGVNVFKCAHCSCIFQKIASLNVHVAKSHATHKDGSSIFSVISRLKELDVQPLSSNEKVEGSYYVKLSESFLDGTVKRYLVRQKKVNNVRWYICTYCSKEFKKPSDLIRHTRTHTKEKPFMCKQCGVSFSLKTTLFHHLKTHNRSNSYTCGICTKKFLSVRTFTAHLKTHVETKNQFRCNSCNKIFNTADKAKRHYEEVHDQNPECEQLKVPLVNTPNGLLPISANKTQLDPKTKPYSCQLCNTRFSKMSNLNRHMFLHNDQRKYRCSVCSKRFNSQQSLDEHKAVHSDLKTFQCNLCEKVFKTSTLLKRHTLTHSTDKPFVCPYCMKTFKTIALCRKHINIHKKDVYFQNMAMFEQVSAATETTDKNNSLLLITQDLLEKTSDDISKSTVLDNTTENQVYQVLPNTVEIISNGVGDVQPQIFISCNDLQLNDGVAYPQNKLENSDTMLFNAVSDIQDTNVLNVDPITQNTEIFNSEIFAENLSNDIEGGSNKVIKINNVNNAHYYVPNSELNLLFNLDLEESNSDIPNDNLMELTDVSAVGPQMAQESSFVCETCMDVFTSKVLLEEHARTHDTITSKTAPTKKDASNSCSFCGKQFKKSSDLTRHIRTHTGERPFKCDKCEKNFSLKSTLVSHQRTHNPVSHKQHNCSVCNSFFTSKSSLKVHMSIHTGDKTYQCNFCPMKFRMPSHKKSHENNQHSKFFERKVKSSVTDLLESVAMESFSAEQIPLENEQLITDCLDNVLVTHINIEPLDDQISPAVTQPMILQQVQPNLLLHDNSSSVIQLDDGYLLNVQPVTPVQSSENKKPRIFECDVCHKTYATKDVLRKHKKIHINKKFPCTICDKGFETEESQNIHIKTHDGFRPYACMQCANSFMNENSLFTHMKSIENLDHVTDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-