Lhir011936.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375804.1:17166436-17167789[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-08 5.2e-05 23.6 0.0 4 36 22 55 19 64 0.90 2 2 4 7.1e+03 -2.5 0.0 27 32 343 348 334 358 0.70
Sequence Information
- Coding Sequence
- ATGCCTAGGAAATATATAAAAAAAACTAATAATCGTGGTGTTGGAAGTAGATATTCTAAGAAAGCTTTAGAATTAGCAATAAGTTCTGTTAAATCTGTAAAATTTTCCCTAAAAAGAGCAGCAGCCAAACATGGGATACCAAAATCGACACTTGGACTAAAAGTAAACGGCTGGCGTGGTAGACCTCCAGCAGGAAATCAAAACGGTGTAGCAGGAGGTGGTAAAACAGCTCTTTCTAAAGAAGATGAAGAAATTTTATCCCCTCGGATAAAGACTATGATGCAATCATATGTTCAGCAAAATAATCAGCAAACTCCATTCCGTAATGGTAAACCTAGAGAAGATTGGTTCTTAAATTTTGCCAAACGCCATCGGCTTCCTATTAAAAAACCAGAAATAATTGAGGCATCACTTATTATGGATGACTTGGAATTGCATCAAACTCCCAGCAAAATATGGAATGCAGATGAAACAGCCTTTAACTATGATCCTAGTCGTACCAAGGTTGTAACAGGGGTTGGAGAAATAGTTCAGAGGCAAACCGGTGGCTCAGGAAGGAAAACAACAACAGTGTTGGCTTGTGTTAATGCTAGTGGATTTAAACTACCTCCTATGATACTCCAGAAGGGAAAACGAGTATGGAATAATATGTTTGGTACAGAAGAGTATCCAGAAACGTCGCACTATGTATCAGAAAATGAGTGGATGACTGAACAAGTAGAGAATGTGACAATTCTAAAACTATCGCCTCATAATTCAGCTATTTTACAGCCTTTGAACGTATCAGTTTTTAAGGGACTCAAATCGTCGTGGGATGCTTTATTAACAGACTGGCAGCGTAGAAATTTAGAACAAGAACTGACAAAAAACGAATTTTCAAACCTTTTGGGGAAAGCGTGGCGTACTATCCAGGAATCTGTCGTTGCAAATGGCTTTAGAAAAACGGGTATTTTCCCTCTTTATCGAAATTCTATTTCTAAAGAAAAATTTGATCCTGCAAGGTTGTCACGATATTATAAAGAAAACGGCATACCTGACAGTACTGACGAGCCAACTCGTGTGCAGGCTCATGTTAACCTTTAG
- Protein Sequence
- MPRKYIKKTNNRGVGSRYSKKALELAISSVKSVKFSLKRAAAKHGIPKSTLGLKVNGWRGRPPAGNQNGVAGGGKTALSKEDEEILSPRIKTMMQSYVQQNNQQTPFRNGKPREDWFLNFAKRHRLPIKKPEIIEASLIMDDLELHQTPSKIWNADETAFNYDPSRTKVVTGVGEIVQRQTGGSGRKTTTVLACVNASGFKLPPMILQKGKRVWNNMFGTEEYPETSHYVSENEWMTEQVENVTILKLSPHNSAILQPLNVSVFKGLKSSWDALLTDWQRRNLEQELTKNEFSNLLGKAWRTIQESVVANGFRKTGIFPLYRNSISKEKFDPARLSRYYKENGIPDSTDEPTRVQAHVNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -