Lhir025321.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375797.1:5144345-5147257[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.2 5.7e+03 -2.1 0.0 32 35 40 44 32 52 0.51 2 2 3.6e-10 6.4e-07 29.7 0.0 2 45 153 195 152 195 0.91
Sequence Information
- Coding Sequence
- ATGGCAGCTAGGTTGAGTACTGAAATGACTTGCTCTAATCTTAGGAAAGAGCACATATTTCTCAAAAAGATTGGAGAGATCTTTGAGGCCGGGTTTGATGCTGCCGTCAAGGCTGGTACCTTGTCGCTGAAAAGAGTTGTAGGTGGGCTCTCTATTGTGGCAATAGAAGGGTGCAGTGTTCAAATACCTTTCAATTATTTCTTTAATCTTGTTTTATTTCTCCTCGCCGGAAACACTGTAGCCAATGGCCATCTCGGTTTAATTACCTGGGTGCAGACATCCGTTGAAGAATGGAGAAGCAGAAGGAAGCCGCCAACGTCCATCAAATCCGGTCTATATGATAGAAACAGCGAAGCCACCGTAACAGAGGATGCCCTCTACAAGGCTGGAATGGAGGAAGATTGTCCGGCGGGGACAAGCCCTCGAACAGAAACTAAAAATTTTTTGAAGTATTCTGAGGCGGATATGGAGCAAGCTTTAGAAGCGGTTAGAACTGGAATGCCTTTGTCAACTGCTTCTAAAACATTTAAAGTGCCTAGAACAACATTATTATACAAACATACGGGAAAATACCCAGTAAAAAGAAAAATGGGTCCCGACACAATTTTGTCCCAAGAAGAAGAAATAGCGTTGGATGTTTTACATAGCTAA
- Protein Sequence
- MAARLSTEMTCSNLRKEHIFLKKIGEIFEAGFDAAVKAGTLSLKRVVGGLSIVAIEGCSVQIPFNYFFNLVLFLLAGNTVANGHLGLITWVQTSVEEWRSRRKPPTSIKSGLYDRNSEATVTEDALYKAGMEEDCPAGTSPRTETKNFLKYSEADMEQALEAVRTGMPLSTASKTFKVPRTTLLYKHTGKYPVKRKMGPDTILSQEEEIALDVLHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -