Lhir007074.1
Basic Information
- Insect
- Lagria hirta
- Gene Symbol
- -
- Assembly
- GCA_947359425.1
- Location
- OX375796.1:29216621-29223262[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.4e-11 1.7e-07 31.6 0.0 2 33 373 404 372 409 0.94 2 2 5 8.8e+03 -2.7 0.0 23 32 416 428 413 440 0.64
Sequence Information
- Coding Sequence
- ATGAGTGTTAGAAAACGTGGAAGTGGCATTGTTTGTTGTTTCAAAAACTGTAAAACTTCTTTTTATACAAAGCAAAACAAAAATGTCCGGTTTTGTAGGATTCCGAAAGATCCAGAAATGTGTAAAGCATGGTTAGAAGCGTCGGGGCGGCCAGACTTATTTAATGAGAGTTCATCAAGGGTTTATAATACATATAGGGTTTGCAGCAAACATTTTGGGGCAGAAATGTGGATGAACAGTGAAAAAAAGCGTCTATTGTCTTCAGCTGTACCAAAGCCATATTGTGAAAGAGAACTGTTGATTGGCACAACAACCACTGTTAATAACATCCATGAATTAACATCACGAAACACAAGTAAAAGAGAACTTAATGAGTTCAGCGCTCAACCTCCTGCTAAAAGAATTCATATATTATCAGACATTACTCTAGGTAATCAATTGGTACAAATTGCGGACTGTAAAGTAACATGTTTATGTTCTAGTACTGCCATTAAAGAAGGAGGAACTGCCGTTTCAAGGTCATTCAAAACTGATCTTCGAGATCAAAGGCACCGACGCACAGTGTCGCATCTTGTAGTATCTAATCTTTGCCCAAATAACAGTTCTGGAAAGAACGACTCACCACTCCAGGCATCAAAGAGAACACTCTTGAGCATTAACCGAGAGAGTTCCCACTCCCACCGAGAATACCTCTTCGGAAATTACCAGGGGTCTTCTCAGGGAGTAACCTACCGCCCTATCCCTCTCCGTCTACGAGAACACTCTTGCGCATTAACCAGAGCGTTCCCGCTCCCAGAGAGAATCCCTCTTCGGAAATTACCAGAGGTCTTCTCAGGGATTGACTTACCGCCACACCGATCAACCGTCAAAGAAACTATCCTACCGAATAATTATTTTTATTTCAAACAGGGCCGTGGAGCACTTCCCGAGCAAGGGTTCCACAGTTACCCGCACATTTCAGTAAAAGCGGGTAGCTGTGGACTGCTACACCGGGGTAACTGTGGTACCACGTGTTTGTGTTATAGTGTGCTCAAAAGTTCTGTTTTAGCAGCAACAATGCCTAGGAAATATATATATATAAAAACTAATAATCGTGGTGTTGGAAGTAGATATTCTAAGGAAGCTTTAGAATTAGCAATACGTGATGTTAAATCTGGAAAATTTTCCCTAAAAAGAGCAGCAGCCGAACATGGGATACCAAAATCGACACTTGGACTAAAAGAAAAATTTGATCCTGCAAAGTTGTCACGATATTATGAAGAAAACGGCATACCAGACAGTACTGACGAGCCAACTCGTGTGCAGGCTCATGTTAATGCATCGTCTAGTTGCAGTAGCTTTATTGCACAAAACCAGAATGAATCAGATTCCGTTGCAGTCTCTTGGGAAAAAGTTTTGCTTTCTGCAGTAAAGCCTTCTCCAAAGATGGAACAAAAGAAGAGGAAACGAATAGACGTTGCTGAAGTGATCACGACTAAAAATTATTTAGAACACTTAAATGTGGCAAAAAATAAGCAGAAACCTGCCAAGAAAACCTGCAAGAAACAACCACAAATCAGTAGCAACAATGCAGAATCAGAGATAGTGGTCTATGCAGAAAGCGACAATTCATATGAACCTTCAAACGATGAAGACGAAAAAATAGAACCTGCAGTTGAAGAGCCTACTGACGAGACAATATTGCTTGGAAAATACATCATAGTACGAAGCAATAAACGAGCAATTACTCATACTGTTGGAATAATAGTACAAAAGAATGCTGTAAAGCGTGGTTCAAATAATCGTAGTGCATATAAATTATTAGGTGTTACAAAAGCAAATCCAGTTTTAACAATTGCAGGTAAGAAGATTTATACAAGTTTCGATGAACCGTTATTAAAAGAAAACAAACATTCTTCTACCGATAAAGAACACCATTCAAGTACTCGTTTTGATAATCTAGAAGGAACGTTTGTCAACATAGACAATAATGACATGATTGGCAAAATAGAATATAAAATGTTGTCTACTTATCAAACAAAAGAATAA
- Protein Sequence
- MSVRKRGSGIVCCFKNCKTSFYTKQNKNVRFCRIPKDPEMCKAWLEASGRPDLFNESSSRVYNTYRVCSKHFGAEMWMNSEKKRLLSSAVPKPYCERELLIGTTTTVNNIHELTSRNTSKRELNEFSAQPPAKRIHILSDITLGNQLVQIADCKVTCLCSSTAIKEGGTAVSRSFKTDLRDQRHRRTVSHLVVSNLCPNNSSGKNDSPLQASKRTLLSINRESSHSHREYLFGNYQGSSQGVTYRPIPLRLREHSCALTRAFPLPERIPLRKLPEVFSGIDLPPHRSTVKETILPNNYFYFKQGRGALPEQGFHSYPHISVKAGSCGLLHRGNCGTTCLCYSVLKSSVLAATMPRKYIYIKTNNRGVGSRYSKEALELAIRDVKSGKFSLKRAAAEHGIPKSTLGLKEKFDPAKLSRYYEENGIPDSTDEPTRVQAHVNASSSCSSFIAQNQNESDSVAVSWEKVLLSAVKPSPKMEQKKRKRIDVAEVITTKNYLEHLNVAKNKQKPAKKTCKKQPQISSNNAESEIVVYAESDNSYEPSNDEDEKIEPAVEEPTDETILLGKYIIVRSNKRAITHTVGIIVQKNAVKRGSNNRSAYKLLGVTKANPVLTIAGKKIYTSFDEPLLKENKHSSTDKEHHSSTRFDNLEGTFVNIDNNDMIGKIEYKMLSTYQTKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00852742;
- 90% Identity
- iTF_00852742;
- 80% Identity
- iTF_00852742;