Lwla012478.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388051.1:15389339-15415595[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.8 3.4e+02 2.7 4.4 1 23 109 131 109 131 0.95 2 10 0.054 4.7 8.5 1.5 1 23 136 159 136 159 0.93 3 10 0.03 2.6 9.3 0.4 1 23 163 186 163 186 0.95 4 10 0.12 10 7.4 1.4 1 19 198 216 198 218 0.98 5 10 0.0004 0.035 15.2 0.8 2 23 231 252 230 252 0.96 6 10 0.00043 0.038 15.1 1.7 2 23 257 279 256 279 0.96 7 10 9.3 8.2e+02 1.5 0.1 13 23 370 380 369 380 0.85 8 10 0.0057 0.5 11.6 0.8 1 23 386 408 386 408 0.98 9 10 8.2e-05 0.0072 17.4 1.3 1 23 414 436 414 436 0.94 10 10 4.3e-07 3.7e-05 24.6 2.3 1 23 442 465 442 465 0.98
Sequence Information
- Coding Sequence
- ATGGAAGATTTACTAGCGTGTCGGGTATGCCTCGCTACCAACGTAAACCTGTTCGATATGTACAAATATAAGCTCAAACATCTATTCGAAATTTTCAGTGGAATTCAAGTGTCTCCGGCCGACAACTACCCACAATACCTGTGCAGCTACTGCTGCGCACTGCTCCTCAAATGTGAGGCCTTCAGGCAGCGGTGTCGCCGGGCTCAGGAGCTCATGAAATACGCCGAAATTAAGAGTGGACTGttcctgagattagcgcgttcaagcCGGTCAAGCCAAGTCCGGTCCTTAAAATCCCACACAGCAGCCGCACACGAACGGAACTACCTCTGCAAGCTGTGCACGCACGTCACCAAGAGCAGCCACCGCGCCAAGGAACACCTCAAGTGGCACAAAGGTCATAAGTTCGTGTGCAAAATTTGTGGGGCTTTGTTCTCTAAGTCCACGAGCCATTTGACCCATTTGAGGTTGCAGCATCCCAGCAAGTTCTGCTGTGAGCTCTGCGGAGAGAGCTTTCTGGGGGAAATGGGACTACGTATGCATATCAAGAAGGCGCATCGGGGGAGTGAGAAACTGAATTTAAAACCGCAATTCAAATGCGCTGTCTGTGAACTTTATTTCAAAACTATGGGCGCTCTGGAACATCACTGCAATAGTTACGAGAACGGCACTTGTGATGGAACATTATGCTCGTGTTTCCAATGCGGGGAGAACGTACCCACACAGGATGCGCTGAGAGAACATTTGAAGACTCACGATGCTGGCGTCAAATGTGAAGAGTGCAACAGAACGTTCGCTCACGAGCGCTCGTTCTCCATCCACTACCAGCGAGTGCACCTGGGCATCAAGCTGAAGCACAAGCCGCGGGTGAAGAGGAAGCAGGTGCCCTGGGTGTGTGAGATATGTGGCAGCAAGTGCATCGACCAATTCAAGGAACATTCCAAGGTCAAGTTCCTATTCGTCGAGTTTTATGCGGCTACCCTCATCAAACTGAACAATGAAAACCAGTGTCGAACGGAGGCAAGCAACTTCACAACAGCTGCCAGATCAAGGAAGTTGAAGGAGAAGTGTGTGGAGGTGTGCGAAGATCATCACGTGAATCTGTCGAACGCTGCTCTGGTGTACCATCAGCGCACACACACGGGCGAGAAGCCTTACCAGTGTATCGAGTGTCCCAAGAAATTCAGCATCTTCCAGCGATTACAGATCCACGTCCGCACGCACACGGGTGAGAGGCCCTTCAAGTGTGCGAGCTGTCCGAAGGCTTTCAAGCACAAGGCGGCGCTCAACAGGCACGACCGGGTACACTCCGGAGAGAAGCCCTACCAATGCGGGCACTGCGGCAAGACATTCTCGCAGTCGAACTCCATGAAGCTGCACGTGAGGACCGTGCACCTCAAGCTGCCCGCGCCGTACCGCACCCGGCGCGGACATGACGCTGATGTACTGGACAGCGACGTCATCTGCTGCTGA
- Protein Sequence
- MEDLLACRVCLATNVNLFDMYKYKLKHLFEIFSGIQVSPADNYPQYLCSYCCALLLKCEAFRQRCRRAQELMKYAEIKSGLFLRLARSSRSSQVRSLKSHTAAAHERNYLCKLCTHVTKSSHRAKEHLKWHKGHKFVCKICGALFSKSTSHLTHLRLQHPSKFCCELCGESFLGEMGLRMHIKKAHRGSEKLNLKPQFKCAVCELYFKTMGALEHHCNSYENGTCDGTLCSCFQCGENVPTQDALREHLKTHDAGVKCEECNRTFAHERSFSIHYQRVHLGIKLKHKPRVKRKQVPWVCEICGSKCIDQFKEHSKVKFLFVEFYAATLIKLNNENQCRTEASNFTTAARSRKLKEKCVEVCEDHHVNLSNAALVYHQRTHTGEKPYQCIECPKKFSIFQRLQIHVRTHTGERPFKCASCPKAFKHKAALNRHDRVHSGEKPYQCGHCGKTFSQSNSMKLHVRTVHLKLPAPYRTRRGHDADVLDSDVICC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -