Basic Information

Insect: Lacanobia wlatinum
Gene Symbol: -
Assembly: GCA_947578705.1
Location: OX388051.1:5357539-5376549[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.047 4.1 8.7 1.2 1 23 195 218 195 218 0.96

2 14 0.0027 0.24 12.6 0.4 1 23 310 333 310 333 0.92

3 14 0.0014 0.12 13.5 0.2 1 22 372 393 372 393 0.96

4 14 7.4 6.5e+02 1.8 0.7 1 12 755 766 755 774 0.71

5 14 0.078 6.8 8.0 3.0 1 23 786 808 786 808 0.97

6 14 0.0016 0.14 13.4 0.9 2 23 814 835 813 835 0.97

7 14 1.7 1.5e+02 3.8 0.4 1 23 858 879 858 879 0.96

8 14 0.52 46 5.4 7.7 2 23 924 945 923 945 0.95

9 14 0.003 0.27 12.5 0.2 2 23 961 982 960 982 0.96

10 14 5.3e-07 4.7e-05 24.3 2.7 1 23 988 1010 988 1010 0.99

11 14 0.00018 0.016 16.3 0.3 2 23 1016 1037 1015 1037 0.96

12 14 0.072 6.3 8.1 3.3 3 21 1045 1063 1043 1066 0.94

13 14 0.47 41 5.6 0.1 1 13 1073 1085 1073 1092 0.85

14 14 0.0017 0.15 13.3 0.8 3 23 1105 1126 1104 1126 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.047	4.1	8.7	1.2	1	23	195	218	195	218	0.96
2	14	0.0027	0.24	12.6	0.4	1	23	310	333	310	333	0.92
3	14	0.0014	0.12	13.5	0.2	1	22	372	393	372	393	0.96
4	14	7.4	6.5e+02	1.8	0.7	1	12	755	766	755	774	0.71
5	14	0.078	6.8	8.0	3.0	1	23	786	808	786	808	0.97
6	14	0.0016	0.14	13.4	0.9	2	23	814	835	813	835	0.97
7	14	1.7	1.5e+02	3.8	0.4	1	23	858	879	858	879	0.96
8	14	0.52	46	5.4	7.7	2	23	924	945	923	945	0.95
9	14	0.003	0.27	12.5	0.2	2	23	961	982	960	982	0.96
10	14	5.3e-07	4.7e-05	24.3	2.7	1	23	988	1010	988	1010	0.99
11	14	0.00018	0.016	16.3	0.3	2	23	1016	1037	1015	1037	0.96
12	14	0.072	6.3	8.1	3.3	3	21	1045	1063	1043	1066	0.94
13	14	0.47	41	5.6	0.1	1	13	1073	1085	1073	1092	0.85
14	14	0.0017	0.15	13.3	0.8	3	23	1105	1126	1104	1126	0.96

Sequence Information

Coding Sequence: ATGACGCGCGCGATCCAGCGCGCGCGCGACGTTGCCGCTTTGTCCCTGATTCCGAAATCAAAACTATCAAAAAGGACGATACAAAAACCAAATAAGGTAATAAAACCGGAGTTAACCGCTTCAAAATCAGACCCAGACGCTTCGAAACCTGAAGAAGTATATGACACAAGTATACTTAAAAAAATCAACGCCTCAGCTAGGGAAAGCACTGAAGCAAATGAAACGTTACCTAGAAAATTCGAAATAGACATTGAAGTAGAATCCTGTGATGACCAAGACGATTTTGGTGAGAATCGTGGTCCAAAGTCTTCTAAAACGAGAATCGAAAACGCATTCTTGAAAAAAGATACAAAACCGACATCTATACCTTTAACCCTAGAGTTCATTCTCGATGCCACTGACAATCTGAACGCGTCAACTAACAAAGCTGATAAAATATTAAACGTATATGTGAGAAATACAATAGGTTACGAGCAAAGACGAAAATTGGTACAGAGCTCGACGGAGAATCAGATACAAGTTACTCTAGACGAATGGCGGACCTGGCAGTCGCGAAGCTTCCACAGGGAAGACCCGTTATTCTACAAATGTTATGTCTGTACAAAATCATATTGGTACTTATCAGAATTCCGCGACCACTTATCTTCAATCCACCCACATGATGAACGCTTAACTATTTCCCTGGAGAAATACGAGATGCATGAAGCGAATGTGATAGCCTATCATCAAAGGCTGGTGGTCATCAAAGATATATACACGCCGGGGCTTTGTTACCGCTGTGGCAAAGATTATTCCGCTCATGAAATATCATCGAGGTTCCAGGAGAAATTTTACAAGCAAGAAGGTTGCTCGAGGCACTTTACTTGCTGTACCGGACTGAGAGACCATTTTCCGTCGTGTACCATTTGTAATGTACAAGGAAAGCCATATAAGTGTGATATCTGTAAGTCAAGATTTGATTCTAAAGAAGAACTGCGTGGTCATCTTGTGTTGTCTCATTCTGTACGGTCTGATGTGCCTATAATGACTCGGTACGCCAGTTGCAAGGTTTGTGCGGAGCGATATGAGTGTAAACATCTGCACTGCTGTGTAGATAAAGTTTTAGGTCTTAATTACGAATGCCCACACTGTTTAATAAGCTTCACTAATGCGTTGACGTTAGAATCGCATGTGAAAACTGTAAAAACACCGTATAAATGTGACATATGTGGAGATGTGATGCCGTTCGGCTGCATGAAGTATGACCATATGTTGTTGCACACTGATAATTTTATGGTAGTTAAAAAGTGCGTGATTTGCGACGGGCTAAACGTTTTTGTGAGCGAAGAGGATGCAAAAGCTCATTGGACTATGAAACATAAGGTCATGGATTTAAGGCGTCAAATCTATTTTCCAAAAGTGTTCGTACCATGGTCCTGCATATACCACAGATTAGCAGAAATCGAATTGAAAGAACAGGAATCATTACTGGAAGCTCAAGAATCGGTATCAGAAGTTCAAGGCCAGCAATCTGGGGCAGAAGACCATCAATCTGGGGCAGAAGACCTGCAATCTGGGGCAGAAGACCATCAATTTGGGGCAGAAGACCAGCAATCTGGGGCAGAAGACCAGCAATTTGGGGCAGAAGACCAGCAATCTGGGGCAGAAGACCAGCAATCGTGGGCAGAAGACCAGCAATCTGGGGCAGAAGACCAGCAATCGTGGGCAGAAGACCAGCAATCTGGGGCAGAAGAAAAAAATGTATGTAAAGAAGAGCAAGAATCAGATATAGATGAAAAAGAATCGTTACTGGATATAGAAGAAGAATCTTTTTCAGCATCTCTACAGAAATCTTTACAAGAAAAGTTAGATTCAGCAGCGAGAGAATTCACAATGGGACGTGTTGTAGTGAAAGAAGAGCCAGAAGATTTAGAAAGCCCAAGACTTGTAATCAAAGAAGAGCCGTTAGAAGAAGTTGACAACCAAATGTTTGAACAGGAAAACCAACCGGACAGCTTTGAAAACCAACCGGACAGTTTTGAAAACCAAATCACGGTTAAACAAGAAGTTGAAGAAGAAGATGAAGATGAGTATGAAGAAGATCTCATTAAACTTAACTTCAATATAGAAGATTATATGGTAAAAGAAGAGATGATAGAATTAGACGGCGAAGTTACAGTTGGTAGACAAAATTCAGATACAGAAGAATCGTTAGCTAAAGATTCAGTAGAACCGAAGGTTGTAATCACGGGAGAGCATAGAAATAGAAATGCCAGAAAACTGTACCGATGTACTACGTGTGGATTCCAGGCAAAGCATAGAGAATACAGAAATCATATAGAATACGACTGTACCAAGATCAATAAACATAAAAGCTATAAGTGTACAAAATGTGACACAGAATTCGGCTCGATGAAAAAATTCTTGACTCACTTCGAGAGACATGGGTATACCACGCTATCCTGTCCAGAATGCTTGAAGCAGTTCAAAACGTTCACATATCTAGGACAGCATCTTCAAACTCATATAAAAAAGAATTACGTCAGAGTCAAGTTGATAACTTATGCAGGGGATGAAACTTCAATACCGAATTTTCAATGTAGAAAATGCCCGGCGAAGGTAGATTCGACGGAATTCTTTGAGCATTGGGAGACGCATATTAAGCCGAAACCGTGTCATCCTGTTAAGGTGATGTCTGGGCCAAATCCATGGGCGAAACAAGAAAGGCATGGGCAACTGCATGAGACTATTATAAAAGAATGTATTGCTCATCTGAATAAACAGCCGAAAGAATGCAACCACTGCCATCGCATGTTCCAACGATCGAACGAGTGCAAGCGACACATTATAGAACATTTACTGGTCGACGCATACAGTCAAAAACATATATTCAAAGAACTTAGGTGCCAGATCTGTGGCAGCGGGTTTCCGGCTTCGGATAAATACAAGCAACACATGCGGGATCACGCGTCGTTGCCTGTGTACAAATGTGAATTGTGTGACCGGACTTTCAGTGATTCCAGTAACTTTACAAAACATAAGAAAGTGCATAATTTGAGGGTCGTAGTTTGTGATTTGTGCGGGAAGAAATTCCAATCGAAGTTGAGTTTGGAAAAGCATATTGAGCAACACCAAAACTCTACGCCAATAATATGCAAAATTTGCAAAAAAATCTTCTACTTCGATACATCATACCGTCGGCATATCAGGTGTTTCCATGAAAAACCTACCAAACTCTTCCGTTGCGTTATCTGTGGCGAGCGTTTTGACAGTCTAAAAGTCAAATGGGATCATCTATGGGAAGTACACAAGGAACGGAAGCAGAAAGCCGACTGTCCTATATGCCATCAATCCTTCAGGAAGTATGCCGATGTGCGCGCCCATGCAAAGAAAATGCATATGACTGCAATCTCAGTCTTGAGTGTCAAAAGGGCAATGGACTTGGCCACGAAGAAACGTGACCCAAGTGTTTTGAATAAATGCATAAGCAATACCGAAGCGCGAATTGCATTTGGACGGCAATCTGAGACACTGGTTGTCTATGATTCTGATTGA
Protein Sequence: MTRAIQRARDVAALSLIPKSKLSKRTIQKPNKVIKPELTASKSDPDASKPEEVYDTSILKKINASARESTEANETLPRKFEIDIEVESCDDQDDFGENRGPKSSKTRIENAFLKKDTKPTSIPLTLEFILDATDNLNASTNKADKILNVYVRNTIGYEQRRKLVQSSTENQIQVTLDEWRTWQSRSFHREDPLFYKCYVCTKSYWYLSEFRDHLSSIHPHDERLTISLEKYEMHEANVIAYHQRLVVIKDIYTPGLCYRCGKDYSAHEISSRFQEKFYKQEGCSRHFTCCTGLRDHFPSCTICNVQGKPYKCDICKSRFDSKEELRGHLVLSHSVRSDVPIMTRYASCKVCAERYECKHLHCCVDKVLGLNYECPHCLISFTNALTLESHVKTVKTPYKCDICGDVMPFGCMKYDHMLLHTDNFMVVKKCVICDGLNVFVSEEDAKAHWTMKHKVMDLRRQIYFPKVFVPWSCIYHRLAEIELKEQESLLEAQESVSEVQGQQSGAEDHQSGAEDLQSGAEDHQFGAEDQQSGAEDQQFGAEDQQSGAEDQQSWAEDQQSGAEDQQSWAEDQQSGAEEKNVCKEEQESDIDEKESLLDIEEESFSASLQKSLQEKLDSAAREFTMGRVVVKEEPEDLESPRLVIKEEPLEEVDNQMFEQENQPDSFENQPDSFENQITVKQEVEEEDEDEYEEDLIKLNFNIEDYMVKEEMIELDGEVTVGRQNSDTEESLAKDSVEPKVVITGEHRNRNARKLYRCTTCGFQAKHREYRNHIEYDCTKINKHKSYKCTKCDTEFGSMKKFLTHFERHGYTTLSCPECLKQFKTFTYLGQHLQTHIKKNYVRVKLITYAGDETSIPNFQCRKCPAKVDSTEFFEHWETHIKPKPCHPVKVMSGPNPWAKQERHGQLHETIIKECIAHLNKQPKECNHCHRMFQRSNECKRHIIEHLLVDAYSQKHIFKELRCQICGSGFPASDKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLRVVVCDLCGKKFQSKLSLEKHIEQHQNSTPIICKICKKIFYFDTSYRRHIRCFHEKPTKLFRCVICGERFDSLKVKWDHLWEVHKERKQKADCPICHQSFRKYADVRAHAKKMHMTAISVLSVKRAMDLATKKRDPSVLNKCISNTEARIAFGRQSETLVVYDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -