Lwla012213.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388051.1:9423327-9474499[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.018 1.6 10.0 0.4 1 23 446 468 446 468 0.98 2 17 0.0048 0.42 11.8 0.6 2 23 476 498 475 498 0.97 3 17 1.2 1.1e+02 4.2 0.2 1 23 502 524 502 524 0.93 4 17 0.009 0.78 11.0 2.0 1 23 529 552 529 552 0.97 5 17 0.001 0.091 13.9 1.0 2 23 557 579 556 579 0.95 6 17 0.22 19 6.6 0.6 3 21 593 611 592 616 0.94 7 17 2.4 2.1e+02 3.3 0.1 2 23 667 689 666 689 0.92 8 17 0.49 43 5.5 1.3 1 10 704 713 704 718 0.94 9 17 1.4 1.2e+02 4.1 2.5 1 10 722 731 722 731 0.95 10 17 1.4 1.2e+02 4.1 2.5 1 10 768 777 768 777 0.95 11 17 1.4 1.2e+02 4.1 2.5 1 10 814 823 814 823 0.95 12 17 2.2 1.9e+02 3.5 2.2 1 10 860 869 860 869 0.93 13 17 1.8 1.5e+02 3.8 1.2 1 10 906 915 906 920 0.94 14 17 0.28 24 6.3 2.0 1 10 924 933 924 946 0.84 15 17 1.1e-05 0.00092 20.2 4.0 1 23 954 976 954 976 0.98 16 17 1.3e-05 0.0012 19.9 4.1 1 23 983 1005 983 1005 0.96 17 17 0.00019 0.016 16.3 1.1 1 23 1011 1034 1011 1034 0.92
Sequence Information
- Coding Sequence
- ATGAAGTGTTGTATACAAAATTGTCGGAATAACGGGAAAGTGAAGAAATTATCTACTAGTACTGAATGGATCACTTTTCATTTGATCCCAAAGGATGCTAAACTGCGGGCATCATGGCTTCAAGCCCTGTCCATATCAACCTGGATGCCACTGAACAGAACCATGATATGTTCAGACCATTTCAAAGAGGATGACTTTTACGTTACCAAGCAAGGAACGAGGAGGATTAAATATGGAGTTATTCCGTTTCTTGCGGTTTGCAAGCTTTGCCTCTCATTGGATGGCAAGATGTACCAATTAAAAGACAACAGTTTGGCTAAAATGTATCAAGATATAATGGGAATAGCGCCAAGGACGGACGCAAACAACAGACTTCCAATGGGCATCTGCTGGGAATGTACAGCAAGGCTCCAGTCAGCCGCTTCATTCAGATCGAAAGCGCTTTTCAGCGATGCACTGCTGCAGGATCATTTGAAGAACAATGTTGATCTAAACATCATCGATATACAAAACCTACATCGCCAACACACTAACCTAAAACCAACAATGGCGGTGCAAGAAGTATTTAAATTCAACAGCCACAACGCTGAAGAACACACCCCAAACACTTTAGTAAAATCAGAAGTAATAGGCATACCGCATAACGAAGAAATTGAGATTGAAGTACAAAATTTAGTTAGCGAGAGAATAACTATAAAAGATGAACGGGAAAACGAAATTATTGAAGAAGCCTGTCCTAACAGTGATGTAAAAACTGAAATCGATTTGATACCTATTACTGAAATTAATGTTAATGATAAAGAAAGCGATTTTGAAGAATTTAGTGATGATGATTGTTGTGTAGTTAAAGAAAATGTGTATGTGAATGAAACGAAAGTTAGTTTGGATAATATTGTTTTATTTAAAAGTGAGGGTAACGGAAAACATAATGAGAAAATGGTCTCTAGTAACATAACTATGGGACAGTCAGATAAAAATATCTGTAGTGATGATGATGATTTTATGGATTTTAATGATGATGTTGCCAGTAATGTTGATGATGATAGTACAAAGGTTGCAAGTAAAGAGGTTGTGTCAGGAAAGAAAACAAATGAAGTTAAAAAGAAAAAAGCAGCTGTTAAAAAAGCAAAGACGGAGGATGATGTTATATGGGTAAAGGGGAGAAGGTCAAAAAAATCGAATATAAAAGCACAAAAACCAAAGGCGAAACAGCCGTACGTAAAGCCTAGCATACCGATTGACGAGAATATCTTCTCCGTGAAGAATTTAAACCACGAAGACTTAATGAAAGAGATACTGGCTCGAAGGGATGGGGACCAATATAGGTTGGCGCCGTACAAGTGTGATGTGTGCTTCCGAGGGTTCCCGACTATGGATAAGCAGGCTAGACATGTGATTAAACATAGCGAGCAAAACGGTTCGATAAAGTGCAATATATGTAATGTGCGAATGGCTAAAAGTAGAGATCTGCGCGCGCATATGAAAAGACAGCACACTTCAGAGTTTATATGTAAGCTGTGTCCTTTGGTCACAAGGAATCGGAACGTTGCTCTAGGACACATGAAGTACCACGAAGGTAGCAAATACGAATGTCCGCAATGTTTTGTTAAGTTCGAGAAGAAAACAACGTTTTTAAGTCATCTGCGTTTAAAACATATGTCTGCTTGTGTTTGTGAACTATGTGGGTACACGTTTGTCAGTAAGACCGGCGTTGAGGTACACAAGAGGATGAGACATAAGCTTTTTGATGAAAAAACGGAGTTCAAGGGCCAGTTGTGTGATGTGTGCGACGTGAAGTTCTTGAATCAAAAGGCGTACAACAGACATCTGCGGTTGTCTTCCAAACATATTAAAGAGGATGATCCCAACCGTATGAGCAACGACCCTTCTATCAAGCAGCGTCGCCTGGGCTCCTCGTGGGTGAACGATCGCCGTTCCCGCCGCCCCGTCATACATCGCAAGGACGCCAACAGCGTGCCAGCTGCCAACGGACCCGTTACTTGTGAACAGTGCGGCGTGGTCCTACAAAGTCTCCGCGCCTACTCCGCCCACTTCAAATACTCGCACCCTGGCACCAATCGTACCCAGTTCGCGCACACCACCACCCCTTACATGTGCGAGCATTGCGGCAAGTTCTTCTTGTTCGCGCACACCACCACCCCTTACATGTGCGAGCATTGCGGCAAGTTCTTCTTGGTGAGTGCTGTTGCTCTAGTGCTCATCTGTCTAGCTTGTACCTGTGGCGGAGGCTTGCAGCCTACCCGGCTCAATCTCACCCAGTTCGCGCACACCACCACCCCTTACATGTGCGAACATTGCGGCAAGTTCTTCTTGGTGAGTGCTGTTGCTCTAGTGCTCATCTGTCTAGCTTGTACCTGTGGCGGAGGCTTGCAGCCTACCTGGCTCAATCTCACCCAGTTCGCGCACACCACCACCCCTTACATGTGCGAACATTGCGGCAAGTTCTTCTTGGTGAGTGCTGTTGCTCTAGTGCTCATCTGTCTAGCTTGTACCTGTGGCGGAGGCTTGCAGCCTACCCGGCTCAATCGTACCCAGTTCGCGCACACCACCACCCCTTACATGTGCGAACATTGCGGCAAGTACTTCTTGGTGAGTGCTGTTGCTCTAGTACTCATTTATCTAGCTTGTACCTGTGGCGGCGGCATGCAGCCTACCCGGCTCAATCTCACCGAGTTCGCGCACATCACCACCACTTACATGTGCGTACATTGCGGCAAGTTCTTCTTGTTCGCGCACACCACCACCCCTTACACGTGCGAGCATTGCGGCAAGTTCTTCTTGAACACCACAGCCCTATCCTGTCATATATGGACCCACGTCCACACAGGTCAGAAGCGATTCCAATGCGACCACTGCCACAAATCCTTCACTATGAAGGCGAACCTCGCGGGTCACATGCAACAACACGAGCCCGTACGACGGACGTACGACTGTCGTGTGTGCGGGAAACACTTCACGTTCAGCTACAACCTCACCAGGCATATGTTTCTGCACACGGGTCTTCGCCCCTTCAAATGCGACGCCTGTGAGAAAACGTTCCGCACATCTGGGGAGCTGCGATCTCATGTGGACCATGTACACTTGAAGAAACCTAGGCCCAAACGCGTCAGACGAAAGGCGAAGAAATGCGAAATGACTAGTCTAGAATACTCAGGAGTATGA
- Protein Sequence
- MKCCIQNCRNNGKVKKLSTSTEWITFHLIPKDAKLRASWLQALSISTWMPLNRTMICSDHFKEDDFYVTKQGTRRIKYGVIPFLAVCKLCLSLDGKMYQLKDNSLAKMYQDIMGIAPRTDANNRLPMGICWECTARLQSAASFRSKALFSDALLQDHLKNNVDLNIIDIQNLHRQHTNLKPTMAVQEVFKFNSHNAEEHTPNTLVKSEVIGIPHNEEIEIEVQNLVSERITIKDERENEIIEEACPNSDVKTEIDLIPITEINVNDKESDFEEFSDDDCCVVKENVYVNETKVSLDNIVLFKSEGNGKHNEKMVSSNITMGQSDKNICSDDDDFMDFNDDVASNVDDDSTKVASKEVVSGKKTNEVKKKKAAVKKAKTEDDVIWVKGRRSKKSNIKAQKPKAKQPYVKPSIPIDENIFSVKNLNHEDLMKEILARRDGDQYRLAPYKCDVCFRGFPTMDKQARHVIKHSEQNGSIKCNICNVRMAKSRDLRAHMKRQHTSEFICKLCPLVTRNRNVALGHMKYHEGSKYECPQCFVKFEKKTTFLSHLRLKHMSACVCELCGYTFVSKTGVEVHKRMRHKLFDEKTEFKGQLCDVCDVKFLNQKAYNRHLRLSSKHIKEDDPNRMSNDPSIKQRRLGSSWVNDRRSRRPVIHRKDANSVPAANGPVTCEQCGVVLQSLRAYSAHFKYSHPGTNRTQFAHTTTPYMCEHCGKFFLFAHTTTPYMCEHCGKFFLVSAVALVLICLACTCGGGLQPTRLNLTQFAHTTTPYMCEHCGKFFLVSAVALVLICLACTCGGGLQPTWLNLTQFAHTTTPYMCEHCGKFFLVSAVALVLICLACTCGGGLQPTRLNRTQFAHTTTPYMCEHCGKYFLVSAVALVLIYLACTCGGGMQPTRLNLTEFAHITTTYMCVHCGKFFLFAHTTTPYTCEHCGKFFLNTTALSCHIWTHVHTGQKRFQCDHCHKSFTMKANLAGHMQQHEPVRRTYDCRVCGKHFTFSYNLTRHMFLHTGLRPFKCDACEKTFRTSGELRSHVDHVHLKKPRPKRVRRKAKKCEMTSLEYSGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00851883; iTF_00851877; iTF_00852167; iTF_00851880; iTF_00852201;
- 90% Identity
- iTF_00852201;
- 80% Identity
- iTF_00851883;