Basic Information

Insect: Lacanobia wlatinum
Gene Symbol: -
Assembly: GCA_947578705.1
Location: OX388051.1:9565629-9585178[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.049 4.3 8.7 0.7 1 23 380 402 380 402 0.98

2 11 0.0032 0.28 12.4 8.8 1 23 409 431 409 432 0.94

3 11 0.34 30 6.0 3.2 1 23 436 458 436 458 0.97

4 11 0.095 8.3 7.7 2.0 1 23 463 486 463 486 0.97

5 11 0.0035 0.3 12.3 0.2 1 23 490 513 490 513 0.94

6 11 1.7 1.5e+02 3.8 0.5 3 21 527 545 526 550 0.91

7 11 1.4 1.3e+02 4.0 0.4 2 23 618 640 617 640 0.94

8 11 0.011 0.92 10.8 0.6 2 20 656 674 655 677 0.91

9 11 2.5e-05 0.0022 19.0 1.4 1 23 683 705 683 705 0.99

10 11 4.4e-05 0.0038 18.3 4.5 1 23 712 734 712 734 0.97

11 11 3.6e-05 0.0031 18.5 1.3 1 23 740 763 740 763 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.049	4.3	8.7	0.7	1	23	380	402	380	402	0.98
2	11	0.0032	0.28	12.4	8.8	1	23	409	431	409	432	0.94
3	11	0.34	30	6.0	3.2	1	23	436	458	436	458	0.97
4	11	0.095	8.3	7.7	2.0	1	23	463	486	463	486	0.97
5	11	0.0035	0.3	12.3	0.2	1	23	490	513	490	513	0.94
6	11	1.7	1.5e+02	3.8	0.5	3	21	527	545	526	550	0.91
7	11	1.4	1.3e+02	4.0	0.4	2	23	618	640	617	640	0.94
8	11	0.011	0.92	10.8	0.6	2	20	656	674	655	677	0.91
9	11	2.5e-05	0.0022	19.0	1.4	1	23	683	705	683	705	0.99
10	11	4.4e-05	0.0038	18.3	4.5	1	23	712	734	712	734	0.97
11	11	3.6e-05	0.0031	18.5	1.3	1	23	740	763	740	763	0.95

Sequence Information

Coding Sequence: ATGAGGTGCTGTGTGCCGACTTGCAAGAATGATTCGAGACACATATCCAAATCACAGGGAATCACTTTCCATGTCTTCCCCAATGAGTCATCACTCCGCAAAGCGTGGCTCAAGGCCCTTGGAAAGGATACTTGGGAACCAAAAGATCGGAGTGCCGTTTGCTCTGAACATTTTCTATGTGAAGACCTGTATGAGACCAAGAGTGGTTTGCGGAGGGTTAGGGCTGGAGCAGTGCCTTTGATAGTTCAGGATTCCTCGAACTGTGATTATGGAGAACCAGCCAGTTTGAAGGCTTGCAGAATATGCCTTGTAATGGACGCGAAGTTAGTATCAATAAGAATATATAACCTGGAGCAGGCTTATGAGAATCTCACAGGAATATCACTATCTGAAGAAGACAAACTACCCCAGAAGCTATGCACAGAATGTGTTCAAAGGTTACTTAACTGCAGTCGATTCAGGCTCAAGAGTTTAAGAGCCAACTCACTCATGCTAGAAGTTATAAAGAAGCAGGATTGTTTAACCGTCCAAAACATTAAGACAATAAACAGGTTGAATAACCAGCTTACTTCAAGTTTATCACCAAAACATTTCGAAGTTAACCATTACGATTCCTACTATGAATATGAAGACCAACCTATACTAATTCAAGACAATTCTCCAAATTACAATGTTGAAATCAAAGTGGAAAACGAAATATTTCTCACGGACGAAATACCTGATAAGAATGACGGACTTAATGAGCCCGGAGTTAACGATCCCGGATTTGACGATCCCGGATTTGGCGACGACGGAATTGCAGATACGGATGTGTTAAATGAAAAGGATGATGTTTCAGAGAAAGAGTACGTTTTATCTGATAAAGATAATTACTCTTCAGATGACAGTCTTCCGCTAGAGAAATGTAAGGTTAAAAAGACGCGGAAAAGAAAAGAAAAGGTGGAAAAACCGGTTAAAACCGCTAAAAGAGCAAAAAAGGTTAAGGATCCGGCTGAGCCCAAGATTGATCGAAGAAGAAAACCGTTTTTAAATGACGATCTTAATGAAACTCTTTTTACCATAACTGATTTGACGTTTGAAGAACAAATAGCTGAGATAGTGAAGAGACAAGAAAGTTCGAATTACAAGAATGCTGTTTATAAGTGTACCGCGTGTTTTAAAGGATTTTTAGATGAAGATGCTTATAATAGCCATATGTCGAGGCATACTAATCAATGTGGAGAACACGAATGCGAAATTTGTAAGACGCATTTCAAGCACCCGCATGCACTCCGGAAACATATCACAGCGCACCACACTCAAAGGTTCAGCTGTAAACAATGTACCTACGTCACGACGCATAGACAAACGGCGAGACTACACGAGCGATGGCATAAGGGGACCAAGTACAGGTGTCCGCATTGTCAGGATGAGTTTGTTAAGTTCACCACGTATATGGGTCACATTCGTATCAAGCATCCTTCAGACTTCGTGTGTGAGCTGTGTGGGTACTCCTTCGTCAGCGCTAAGGGTATAGAACTGCATAAGAAGCTCAAACATCGCCTGGAGAATGTACAGATACCTGAAGACGGTCCTTTGTGCGAGCTGTGTAACGTTCGGTTCATATCATCCGAAGCTCATAAACGACATCTCAGTGTTTCAGCGAGGCATAACACAGGTACCGACAAAGACTCGAGGGAATCAAACAAACCGAAGAAGAGCAGGAAATCGAAAGAGTGCAAGGAGCTGGAGCGTCGGGCACGAGATAAGGACGCAGATAGCGATGAAAAGAGACGGATATATCCCAGTCAGATGCGGAAGGCGGAGGGACCCATACCGTGTGAACAGATGCGGAAGGCGGAGGGACCCATACCGTGTGAACAGTGTGGTCTCCAACTAGAAGACTCCCGGGCGTACCACGGCCACTTCAGACGAATGCACCCCGACAAGAACCGGACAAACTATCCCTCGATGAAATCACCATGCATGTGCGAAGTTTGTGGCAGGATGTTCCAAAGTTACGCCCTCCTAAAAGACCACACATGGGTCCACACGGGCGAGCGTCCGTTCAAATGCGACTCGTGCGGCAAATCTTTCAGGATGAAACAACGGCTGGTGGCTCACAGACGTGTGCACAGTCAAGTGCGAGCCAGTTACGTGTGTGCGCTCTGTGGGAAGCACTTCTCCACGCATAGCAACCGACAGCGGCATATGTTTATCCATACTGGTCTAAAGCCGTTTAAATGCGAGATGTGCGGCAAAGGCTTCAAGCACGCGAGTGAGAAGCGGGCCCACATTACCTACGTGCATCTGAAGAAACCGTGGCCGAAGCGCGCGAGGGGGAAGCGGAGACCTGAGACTAGACAGGGCCAGTTAGTTCCACAAGATCAGGACATGGACATCGAAGCCCCCATGTGGCCCCCTTGCGACCCCAAGATGGGGGAAATGGGCCCCATGATAGAAGATAAACCAGTTTACTACAACTTGAAGATTTAA
Protein Sequence: MRCCVPTCKNDSRHISKSQGITFHVFPNESSLRKAWLKALGKDTWEPKDRSAVCSEHFLCEDLYETKSGLRRVRAGAVPLIVQDSSNCDYGEPASLKACRICLVMDAKLVSIRIYNLEQAYENLTGISLSEEDKLPQKLCTECVQRLLNCSRFRLKSLRANSLMLEVIKKQDCLTVQNIKTINRLNNQLTSSLSPKHFEVNHYDSYYEYEDQPILIQDNSPNYNVEIKVENEIFLTDEIPDKNDGLNEPGVNDPGFDDPGFGDDGIADTDVLNEKDDVSEKEYVLSDKDNYSSDDSLPLEKCKVKKTRKRKEKVEKPVKTAKRAKKVKDPAEPKIDRRRKPFLNDDLNETLFTITDLTFEEQIAEIVKRQESSNYKNAVYKCTACFKGFLDEDAYNSHMSRHTNQCGEHECEICKTHFKHPHALRKHITAHHTQRFSCKQCTYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLENVQIPEDGPLCELCNVRFISSEAHKRHLSVSARHNTGTDKDSRESNKPKKSRKSKECKELERRARDKDADSDEKRRIYPSQMRKAEGPIPCEQMRKAEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPETRQGQLVPQDQDMDIEAPMWPPCDPKMGEMGPMIEDKPVYYNLKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038854;
90% Identity: iTF_00300637;
80% Identity: iTF_00851870;